Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03676 ATGTTCTTCTCTGGAAAAGTGGGAGAAGGACATTGTTGCAAGAGAACCAACCATAAGAAACAAGGACATTATGTTACAAAAGTTCCTCTTAGAAACAGTCAATTGTTACATGGACACAGTGATGGAGGTAAACCTAAACCTGTGATTCTCCCAACTCCAAGATCTGAAGGGGACATACTTTCCTCTCCACATTTAAAAGCATTCACATTTAAGGAACTTAGAAATGCTACTAAGAATTTCAGTAATGATTATTTAATTGGACAAGGAGGATTTGGTTATGTCTATAAAGGATGGATTGATTGTCATTCACTTAGGGCTACAAAGCCTGGTTCTGGAACTCCTGTTGCTGTCAAGAAGCTTAAGCCTCAAGGGTTTCAAGGCCATAAGGAGTGGTTGTCTGAACTCAATTATCTTGGACAACTTCATCATCCAAATCTTGTCAAACTTACTGGATATTGCCTTGATGGGGATAACAGGCTTCTAGTCTATGAGTACATGCCTAATGGAAGCTTGGAAGATCATCTATTTCGCAAGGGAACACGCGTACTTCCTTGGGCAACAAGAATCAAAGTTGCCACTGGTGCTGCTCGAGGTCTCACCTTCCTACATGACTCTAATCAACAAATTATCTACCGTGATTTCAAGGCTTCTAATATTTTAATAGACTCGGAATTTAATGCAAAACTCTCGGACTTTGGATTGGCCAAAGCAGGTCCGACTGGTGATCGTTCTCATGTTTCTACTCAAGTCTTGGGCACTCATGGCTATGCTGCTCCTGAATATATTCTTACagGCCGGCTGACAACAAGGTGCGATGTGTATAGCTTTGGAGTTGTACTATTAGAACTACTATCAGGGCGCAATGCTGTCGACAAAACAAAATCTGGAGCAGAACATAATTTGGTAGATTGGGCAAGACCGTATTTGGGTGATAGAAGGAAGTTGTTTCGGATAATGGACACAAGATTAGAAGGACAGTATCCCCAAAGGGCAGCTTATACAGCTGCAATTCTTGCATTACAATGTATTAGTGAGGCCAAGTTTCGACCACAAATGTCCGAGGTTTTGACTACTTTGGAACAATTGCCAGTCATCAGACATACAGCTAGTCCTTCTAGATTAGAGGATAAACCAATGTCAAGTCCAATGAGTGATAGAGTCTGA 1164 0.4107 MFFSGKVGEGHCCKRTNHKKQGHYVTKVPLRNSQLLHGHSDGGKPKPVILPTPRSEGDILSSPHLKAFTFKELRNATKNFSNDYLIGQGGFGYVYKGWIDCHSLRATKPGSGTPVAVKKLKPQGFQGHKEWLSELNYLGQLHHPNLVKLTGYCLDGDNRLLVYEYMPNGSLEDHLFRKGTRVLPWATRIKVATGAARGLTFLHDSNQQIIYRDFKASNILIDSEFNAKLSDFGLAKAGPTGDRSHVSTQVLGTHGYAAPEYILTGRLTTRCDVYSFGVVLLELLSGRNAVDKTKSGAEHNLVDWARPYLGDRRKLFRIMDTRLEGQYPQRAAYTAAILALQCISEAKFRPQMSEVLTTLEQLPVIRHTASPSRLEDKPMSSPMSDRV 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03676 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Tsu04g03676 387 MobiDBLite consensus disorder prediction 367 387 - -
Tsu04g03676 387 Gene3D Transferase(Phosphotransferase) domain 1 166 375 - -
Tsu04g03676 387 Gene3D Phosphorylase Kinase; domain 1 52 165 - -
Tsu04g03676 387 Pfam Protein tyrosine and serine/threonine kinase 85 301 IPR001245 GO:0004672|GO:0006468
Tsu04g03676 387 PANTHER BNAC02G17010D PROTEIN 26 377 - -
Tsu04g03676 387 SUPERFAMILY Protein kinase-like (PK-like) 58 360 IPR011009 -
Tsu04g03676 387 PANTHER OS01G0588500 PROTEIN-RELATED 26 377 - -
Tsu04g03676 387 ProSitePatterns Protein kinases ATP-binding region signature. 86 119 IPR017441 GO:0005524
Tsu04g03676 387 ProSiteProfiles Protein kinase domain profile. 80 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03676 387 CDD STKc_IRAK 86 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03676 Tsu-Chr4 45820206 45824075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03676 66 359 Glycoside Hydrolase AT3G07070 53.691 5.46e-105 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Tsu04g03676 PK_Tyr_Ser-Thr 2.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03676 - - gmx:100791844 569.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03676 04 45820206 45824075 Tsu04g03676 04 45820206 45824075 ECH
Tsu05g01776 05 18525558 18528396 Tsu04g03676 04 45820206 45824075 PCT