Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03673 ATGATGGTAAATTCTGACCCTGCTAGCTTCTGTACTCGAGCAAACGCTCTTCTCAGGAAGAATTTAACCTTCCAGAAACGGAACAAGAAGACCAACATTAGGCTGATTTTATTCCCATTGTTCCTGTGCATATTGCTGGTTGTCCTCCAACATTTAATCGACAATCAATTGGATAAACCTGAATTCAAATGCGGTTGCGTCTGTACCAACGGCAAAACAACATGTGGTGACTCAGAGAAGGTCTGCGGAGTTGAGTATTCCGATCAGAATCAAGTATTAGCCTGTGCAATTCCTAACCCACCTGAATGGCCTCCTCTCTTGCAACTTCCGACCAGCGAGTTATGGTATTATACCATGCTCTTCACAGCCGACAATCAATCCTTTGGACAGATTGTGATTGACAATATGTTGCCAAGTTCCTTGACTATGAATTACACGGATATCATGGCTAGTTTGGCAACAAACGTGctggGATCAGAAGTAAAGCCCGAGAACAACAATTTTCTTGAACCTGCTTTCACTTCGGATCATCCCATTTATTATCTACAAACCCGCTGCCCTCAGGACAACATTCCATTCCCAGAAATCTACCAGACAGGAGGCAATACTTTGCAGCAGTATACAAAATCATTTTCTTACAAGATAGCAGGCTTTACTGTGGAGAAAGATATCATATGTGCCGACGGTATAAGTTTATGGCGTGGAAGTGCTTCTGAGATCAACATTGAGTTATATGAAGGTCAAGAGATCAATACAATAGTTTCAGcttttgattttctaaattcaaatgGGAATGGATTTAATGTCACTGTATGGTACAAGTCAATCTTCAAGGGTGTCACTAATTTTGGTCCTACTGCATTGTTGCGATTTCCTCGTTCTGTAAATTTGATATCAAATGCCTACCTACAGTTTCTGCTGGGACCTGGTACCAAAATGTTATTTGAGTTTGTAAAGGAAATGCCAAAATCTGAGACCCCAATTAGGATTGAGATAGCTTCTCTCCTGGGCGGTCTGTTCTATACATGGGTCATCCTGCAACTTTTTCCGGTTGTTCTGACATCACTGGTTTATGAGAAGCAACACAAATTAAGAATCATGATGAAGATGCATGGTCTTGGTGATGGGCCATATTGGATGATTACATATGGTTATTTTCTTGTATTATCAGTGATCTACATGTTGTGCTTTGTGATATTCGGCTCAGTCTTAGGATTAAAGTTCTTCACCTTGAATGACTACAGCATCCAGTTCGTGTTCTATTTCATCTATATAAACTTACAAATTTCAATGGCATTTCTGTTGGCTTCCTTTTTTTCAAATGTTAAGACTGCTACAGtAACCGCATACATTGGTGTCTTTGGCAACGGGCTATTATCCGGGtttcttttccaattttttattgaagattctTCATTTCCAAGAGGATGGATCATTTTTATGGAGTTGTATCCTGGGTTTGCTTTATATCGTGTGTTGTATGAGTTTGCACAGTCTGCCACCAGTGGCAGGAATTCTGGGACTGATGGTATGCGGTGGCAGGATCTGAGTGATAACACCAATGGCATGAAAGATGTCTTAATTATCATGTTTGCTGAGTGGATAGTAGTGCTTTTTGTTGCTTATTACATCGATCAAGTATTTTCAACAGGAAGTGGAAAAAGTCCACTTTTCTTCTTGAAAGGATTTCAGAAAAGGCCTCTTTCATCATTCAAGAAGCTCAGTATTCAAAGGCAGGGGTCAAAAGTTTTGGCTCAGATGGAGAAACCAGATGTCATCCTAGAGaAGGAGAAGGTGGAGCAGCTGCTACTTGAACCAACCATTGATCATGCAATTATTTGCGATGACCTAAAAAAATTCTATCCAGGAAGAGATGGAAATCAAGGGAAATTTGCAGTGAGTGAATTATTCCTTGCTGTACCTCGAGGGGAATGCTTCGGTATGCTTGGTCCTAATGGGGCTGGGAAGACTTCTTTTATCAATATGATGATTGGTCTGACAAAGCCAACATCTGGTGCGGCATATGTTCAAGGCCTGGACATAAGAACTCATATGGATGGAATATATACTAGCATGGGAGTATGCCCACAGCATAACTTGCTGTGGGAAAACTTGACAGGTAGAGAGCACCTACTTTTTTATGGCAGACTTAAAAATCTTAAAGGTTCGGTCTTGACTCAAGCAGTAGAAGAATCTTTGAAGAGTTTAAACCTTTTCCATGGAGGGGTTGCTGATAAACAAGCTGGAACATACAGTGGAGGGATGAAGAGAAGGCTTAGTGTTGCAATTTCATTGATTGGGGACCCCAAAGTTGTTTATATGGATGAGCCAAGTACTGGATTAGACCCTGCTTCAAGGAAATGCCTATGGAATGTTATCAAGCTTGCAAAACAGGACCGTGCAATCATTCTGACTAGTATTCTCTCACTCCTTCATGGATTTTGTAGCACTATATTCTGCTTCTAG 2466 0.4006 MMVNSDPASFCTRANALLRKNLTFQKRNKKTNIRLILFPLFLCILLVVLQHLIDNQLDKPEFKCGCVCTNGKTTCGDSEKVCGVEYSDQNQVLACAIPNPPEWPPLLQLPTSELWYYTMLFTADNQSFGQIVIDNMLPSSLTMNYTDIMASLATNVLGSEVKPENNNFLEPAFTSDHPIYYLQTRCPQDNIPFPEIYQTGGNTLQQYTKSFSYKIAGFTVEKDIICADGISLWRGSASEINIELYEGQEINTIVSAFDFLNSNGNGFNVTVWYKSIFKGVTNFGPTALLRFPRSVNLISNAYLQFLLGPGTKMLFEFVKEMPKSETPIRIEIASLLGGLFYTWVILQLFPVVLTSLVYEKQHKLRIMMKMHGLGDGPYWMITYGYFLVLSVIYMLCFVIFGSVLGLKFFTLNDYSIQFVFYFIYINLQISMAFLLASFFSNVKTATVTAYIGVFGNGLLSGFLFQFFIEDSSFPRGWIIFMELYPGFALYRVLYEFAQSATSGRNSGTDGMRWQDLSDNTNGMKDVLIIMFAEWIVVLFVAYYIDQVFSTGSGKSPLFFLKGFQKRPLSSFKKLSIQRQGSKVLAQMEKPDVILEKEKVEQLLLEPTIDHAIICDDLKKFYPGRDGNQGKFAVSELFLAVPRGECFGMLGPNGAGKTSFINMMIGLTKPTSGAAYVQGLDIRTHMDGIYTSMGVCPQHNLLWENLTGREHLLFYGRLKNLKGSVLTQAVEESLKSLNLFHGGVADKQAGTYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRKCLWNVIKLAKQDRAIILTSILSLLHGFCSTIFCF 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03673 821 Gene3D - 605 819 IPR027417 -
Tsu04g03673 821 Pfam ABC transporter 637 778 IPR003439 GO:0005524
Tsu04g03673 821 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 612 806 IPR027417 -
Tsu04g03673 821 CDD ABC_subfamily_A 612 806 - -
Tsu04g03673 821 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 8 112 IPR026082 GO:0016021|GO:0055085|GO:0140359
Tsu04g03673 821 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 117 806 IPR026082 GO:0016021|GO:0055085|GO:0140359
Tsu04g03673 821 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 117 806 - -
Tsu04g03673 821 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 8 112 - -
Tsu04g03673 821 Pfam ABC-2 family transporter protein 332 542 - -
Tsu04g03673 821 ProSitePatterns ABC transporters family signature. 751 765 IPR017871 GO:0005524
Tsu04g03673 821 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 612 820 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03673 Tsu-Chr4 45789029 45797393 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03673 638 812 Calmodulin-binding Proteins AT2G36910 24.444 5.44e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03673 - - gmx:100805474 1140.18