Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03672 ATGGTAAATCTTGCCCCTGTCACCTTCAGGACTCAGGCAAATGCTCTTATCAGGAAGAATTTAACTTTCCAGAAACGGAATGTGAAGACCAACATTCGGCTTATTTTGTTCCCGATGATCATTTGCGTCTTGCTGGTTCTCGTTCAAAGTATAATGGACATTGAATTGGATAAATCAGAGTTCAAATGTGGCTGCATCTgtttcaacaacaaaacaagATGTGATGATTCAGAGAAGGTTTGTGGGGTTCAGTATTCTAATCAGATTCAAGTTCAAACCTGTGCTGTTCCTAATCCACCTGAATGGCCTCCTCTCTTGCAACTTCCTGCCGTGTCATGCAAGAAAACTGCCTCCTGTTCTCTTACCATGCTCTTCACTGCCAACAATCATTCCTTTGGACAGAGTGTGTCCAAAAATATATTCCCAAGTGCCTTAACTATGAATTACTCTCATAACATGGCTAGTTTGGCACTAAATGTGCTTGGATCTGAATCAATGACTGAGGTCAACAATTTGCATGAACCTGCTTTCACTTTAGAGCTTCccatttattatttacaaactCAGTGTCCTCAGAACAACTCAGGATTCTCATTTCCCTACCAGATAGCAGCCACTACTGAGCAGCAAGAAATCAAATGTGCTCAAGGTATAAATTTATGGCGTAACAGTTCTTATGAGATCAACGATGATTTATACAAAGGTTATCATAGAGGTAACCTAGAAGGACGAATCAATGAGATAGTTTCAGcttttgattttctaaattcaaatagGGACGGATTCAATGTTACTGTATGGTACAATTCAACCTACAAGGGTAACACTAGTTTGGTCCCTACTGCATTGTTGCGAATTCCTCGTTCCGTAAATCTGATATCAAATGCCTACTTGCAGTTTCTGCGTGGACCTGGTACCAAAATGTTATTTGAGTTTGTAAAGGAAATGCCAAAATCTGAGACTACATATAGGATCGAGATAGCTTCTCTCCTGGGCGGTCTGTTCTTTACATGGGTCATCCTTCAACTTTTTCCGGTTGTTCTCACATCACTGGTTTATGAGAAGCAACACAAATTAAGAATCATGATGAAAATGCACGGTCTTGGTGACGGGCCATATTGGATGATTACATATGGTTATTTTCTTGTATTATCAGGGACCTACATGTTGTGCTTTGTGATATTCGGCTCAGTCTTAGGATTAAAATTCTTCACCTTGAATGACTACAGCATCCAATTCGTGTTTTATTTCATCTATATAAACTTACAAATATCATTGGCATTTCTGTTGTCTAATGTTTTTTCAAATGTTAAGACTGCTACAGtaaGCGCTTATATAGGCGTCTTTGGAACCGGGCTATTAGGCGGATTTCTTTTTGACTTTTTTCTTCAAGATTCATCATTTCCAAGAAAATGGATCATTTGTATGGAGTTGTTTCCCGGGTTTGCTTTATATCGTGGATTATGGGAGTTTGCACAGTTTGCCACTGAAGGCAATAATTCTGCGACTGATGGTATGCGGTGGCCGGATCTGAGCGATAGTACAAATGGAATGAAAGAAGTCTTAATTATCATGTTTTTTGAGTGGACAGTAGTTCTTTTTGCTGCTTATTACATCGACCAAGTATTATCGACAGGAAGTGGGAAAAGTCCTCTTTTCTTCTTAAAAGAATTTCAGAAAAAACATCTTTCATCATTCAAGAAGCTAAGTATTCAAAGGCAGGGGTCAAAAGTTTTGGCTCACATGGGGAAATCTGATGTCATCCAAGAGaGGGAGAAGGTGGAGCAGCTTCTACTTGAGCCAACCATTAACCATGCAATTGTTTGCGATGacctaaaaaaaatctatccAGGAAGAGATGGAAATCCAAGGAAATTTGCAGTGAGAGAATTGTTCCTTGCTGTGCCTCGAGGGGAATGCTTCGGTATGCTTGGTCCTAATGGGGCTGGGAAGACATCTTTTATCAGTATGATGATTGGTCTCACAAAGCCAACGTCAGGTGCGGCATATGTTCAAGGCCTGGACATAAGAACTCATATGGATGCAATATATACTAGCATGGGTGTATGCCCACAGCATAACTTGCTGTGGGAAAGCTTGACAGGTAGAGAGCACCTACTTTTTTATGGCAGACTAAAAAATCTTAAAGGTTCAGCCTTGACTCAAGCAGTAGAAGAATCTTTGAAGAATTTAAACCTTTTCCATGGAGGGGTTGCTGATAAAAAAGCTGGAAAATACAGTGGAGGGATGAAAAGGAGGCTCAGTGTTGCAATTTCATTGATTGGGGACCCCAAAGTTGTTTATATGGATGAGCCAAGTACTGGATTAGACCCTGCTTCAAGGAAATGCCTATGGAATGTTATTAGGCTTGCAAAACGGGATCgtgcaatcattcttaccaCACATTCTATGGAAGAGGCAGAGGCGCTATGTGATCGATTAGGAATTTTTGTCGATGGTAGTTTGCAATGCATAGGAAATCCAAAGGAGCTGAAAGCCAGATATGGAGGAGCCTATGTGTTCACAATGACAACATCTTCAGATCATGAGAAGGATGTGGAGAACATGGTACAACAGCTGACCCCAAATGCCAACAAGATATACCATCTCTCAGGTACCCAAAAATTTGAGCTGCCAAAAGAGGATGTTAAAATAGCGAAAGTGTTCCAAGCTGTTGAAGTTGCAAAAAGAAACTTCACTGTTTTTGCATGGGGTTTATCTGATACAACATTAGAAGATGTCTTCATCAAGGTAGCACGCCATGCTCAGGCATTTGATACCTTGTCATAG 2790 0.3925 MVNLAPVTFRTQANALIRKNLTFQKRNVKTNIRLILFPMIICVLLVLVQSIMDIELDKSEFKCGCICFNNKTRCDDSEKVCGVQYSNQIQVQTCAVPNPPEWPPLLQLPAVSCKKTASCSLTMLFTANNHSFGQSVSKNIFPSALTMNYSHNMASLALNVLGSESMTEVNNLHEPAFTLELPIYYLQTQCPQNNSGFSFPYQIAATTEQQEIKCAQGINLWRNSSYEINDDLYKGYHRGNLEGRINEIVSAFDFLNSNRDGFNVTVWYNSTYKGNTSLVPTALLRIPRSVNLISNAYLQFLRGPGTKMLFEFVKEMPKSETTYRIEIASLLGGLFFTWVILQLFPVVLTSLVYEKQHKLRIMMKMHGLGDGPYWMITYGYFLVLSGTYMLCFVIFGSVLGLKFFTLNDYSIQFVFYFIYINLQISLAFLLSNVFSNVKTATVSAYIGVFGTGLLGGFLFDFFLQDSSFPRKWIICMELFPGFALYRGLWEFAQFATEGNNSATDGMRWPDLSDSTNGMKEVLIIMFFEWTVVLFAAYYIDQVLSTGSGKSPLFFLKEFQKKHLSSFKKLSIQRQGSKVLAHMGKSDVIQEREKVEQLLLEPTINHAIVCDDLKKIYPGRDGNPRKFAVRELFLAVPRGECFGMLGPNGAGKTSFISMMIGLTKPTSGAAYVQGLDIRTHMDAIYTSMGVCPQHNLLWESLTGREHLLFYGRLKNLKGSALTQAVEESLKNLNLFHGGVADKKAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRKCLWNVIRLAKRDRAIILTTHSMEEAEALCDRLGIFVDGSLQCIGNPKELKARYGGAYVFTMTTSSDHEKDVENMVQQLTPNANKIYHLSGTQKFELPKEDVKIAKVFQAVEVAKRNFTVFAWGLSDTTLEDVFIKVARHAQAFDTLS 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03672 929 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 8 929 - -
Tsu04g03672 929 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 8 929 IPR026082 GO:0016021|GO:0055085|GO:0140359
Tsu04g03672 929 CDD ABC_subfamily_A 611 832 - -
Tsu04g03672 929 Gene3D - 599 874 IPR027417 -
Tsu04g03672 929 Pfam ABC transporter 632 773 IPR003439 GO:0005524
Tsu04g03672 929 ProSitePatterns ABC transporters family signature. 746 760 IPR017871 GO:0005524
Tsu04g03672 929 SMART AAA_5 637 820 IPR003593 -
Tsu04g03672 929 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 607 844 IPR003439 GO:0005524
Tsu04g03672 929 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 606 835 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03672 Tsu-Chr4 45756183 45786659 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03672 616 831 Calmodulin-binding Proteins AT2G36910 23.894 2.96e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03672 - - gmx:100792897 1380.16