Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03668 ATGGAGTGCTCTTCTAAATCTGGTGATGGAGATAGTGGTCTCAAGGAAGATACGAGAAGTGAGCATAGTATTGGTGATGATCATGAAAGTAATCATCATCATAGAAAGGAGACTATTGTTGAGGAACAACCCATTGCTAATGCTGAAAGATCAATGGTGGAGGCAGAACCAATAGCATCCTCTGCCAAAAATGATAAGGTTGTTGATGATCAACTTGAGGCAACAAAAGTCCAAATGGGTGAAGTGAGGGAAGAAAATCAACGGTTAAAGATGTGTCTCAACAAAATAATGACTGAATACCGGGCActagaaattcaatttcaaaacatGGTTAAGCAAGAAACAAAGAAGAACAATGTTGATCAAAATGATAATAACAACCATGATGAAATAATGGCAGAATCTGATCTTGTTTCCCTTAGCCTTGGAAGAGTTCCTAGTAACAATGTTCCAAAAAATGAAGACAAAGTTAACAAAGTCTCTAAACTAGCATTGaacaatgaagatgaagaatttaaGGAAGAATTGGCTCTTGGATTGGATTGTAAATTTGAAACATCAAAATCAGGTAGCACTACTGAAGGATTACCAAATGTTCCAAGTCCTGTGAATAGTTCTGAAGTAGTTCCACTAAAGGATGATGAAGTTGTGGAAACTTGGCCACCAAGTAAGGCAGTTAATAATAAGACAGTTAGAGACGTTGAGGATGAAGTTGCTCAACAAACTCCTGCCAAGAAAGCTAGAGTTTGTGTTAGAGCACGATGCGACACACCAACGATGAATGATGGATGCCAATGGAGGAAATATGGACAAAAGATTGCAAAAGGAAATCCATGCCCGCGAGCTTACTATCGTTGCACGGTTGCACCATCATGTCCAGTTAGAAAACAGGTACAAAGATGTGTTGAAGACATGTCAATTTTAATCACAACCTATGAAGGAACACACAACCACACCCTCCCTCTTTCAGCAACAGCTATGGCATCCACGACATCCGCGGCCGCGTCAATGCTATTATCAGGTTCATCAACTTCCCATTCTGGTTCAATCCCATCAACACAAACCAACAACAATCTTCATGGCCTAAACTTTTACCTACCAGATGGTTCAAAACCAAACCAACTTTACCTATCAAACCCTGCACTGTCATCTCAACATTCACATCCAACAATCACTCTTGACCTCACTTCAAATCCATCAAATTCTTCAACATCACCCTTTGTTAGATTCAACAATAACCAATTACCAAGATACCCTTCTTCCACAAGTCTTAGCTTTAGTTCCCCTGAATCAAATCCAATGCATTGGAATAGCTTCCTAAGTTATGCTACTACACAAAATCAACAACCATATAATAACATTAATAGAAACAATAATAATCTCAGCACATTAAACTTTGGTAGtagacaacaaaatacaatggAAAATATATACCAATCCTACAtgcaaaaaaacaacaacaatgttTTACCAGATAGTACTATATCTGCAGCAACAAAAGCAATAACTGCTGATCCAAATTTTCAATCAGCTTTAGCTGCAGCACTTTCATCACTTATTGGAAACAATACTAATAATCAAGGGAATCAAACTAATCAAAGTGGAGGAGAAAATTTGAGTCAGAAAATGAAATGGGCTGAGATGTTTCCTGTTTCTGCTAGCTCATTGCCTTCAAGTTCTAAAGTTAATGGTTGTGCTTCAAGTTTCTTGAACAAGACGGCACCGGCGAATGCACAGACAGGAAGTTTGATGTTGTTGTCTCCTTCTTTGCCATTTTCTACAACCAAAAGTGCTTCTGCATCTCCTGGTGGTGGTGATAATAGTGATAACACCAATTAA 1839 0.3698 MECSSKSGDGDSGLKEDTRSEHSIGDDHESNHHHRKETIVEEQPIANAERSMVEAEPIASSAKNDKVVDDQLEATKVQMGEVREENQRLKMCLNKIMTEYRALEIQFQNMVKQETKKNNVDQNDNNNHDEIMAESDLVSLSLGRVPSNNVPKNEDKVNKVSKLALNNEDEEFKEELALGLDCKFETSKSGSTTEGLPNVPSPVNSSEVVPLKDDEVVETWPPSKAVNNKTVRDVEDEVAQQTPAKKARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPSCPVRKQVQRCVEDMSILITTYEGTHNHTLPLSATAMASTTSAAASMLLSGSSTSHSGSIPSTQTNNNLHGLNFYLPDGSKPNQLYLSNPALSSQHSHPTITLDLTSNPSNSSTSPFVRFNNNQLPRYPSSTSLSFSSPESNPMHWNSFLSYATTQNQQPYNNINRNNNNLSTLNFGSRQQNTMENIYQSYMQKNNNNVLPDSTISAATKAITADPNFQSALAAALSSLIGNNTNNQGNQTNQSGGENLSQKMKWAEMFPVSASSLPSSSKVNGCASSFLNKTAPANAQTGSLMLLSPSLPFSTTKSASASPGGGDNSDNTN 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03668 612 SUPERFAMILY WRKY DNA-binding domain 253 321 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu04g03668 612 MobiDBLite consensus disorder prediction 9 43 - -
Tsu04g03668 612 ProSiteProfiles WRKY domain profile. 255 321 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu04g03668 612 MobiDBLite consensus disorder prediction 591 612 - -
Tsu04g03668 612 MobiDBLite consensus disorder prediction 188 207 - -
Tsu04g03668 612 Gene3D WRKY domain 244 322 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu04g03668 612 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 34 603 IPR044810 GO:0003700
Tsu04g03668 612 Pfam WRKY DNA -binding domain 261 318 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu04g03668 612 SMART WRKY_cls 260 320 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu04g03668 612 MobiDBLite consensus disorder prediction 188 205 - -
Tsu04g03668 612 MobiDBLite consensus disorder prediction 1 66 - -
Tsu04g03668 612 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 34 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03668 Tsu-Chr4 45714870 45719808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03668 79 527 WRKY Transcription Factor Family AT5G15130 40.373 4.51e-86 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu04g03668 WRKY 2e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03668 - - pvu:PHAVU_003G192000g 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g00126 04 1148674 1151414 Tsu04g03668 04 45714870 45719808 ECH
Tsu04g03668 04 45714870 45719808 Tsu04g03668 04 45714870 45719808 ECH