Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03665 atgtcaTTTCAACATCACCCACAATTTCATAGGATAATATTGCAAGATAAGAAGCTTAGGATTCCCAAAAAATATGTGGAGATATTTTGGAAAGGAATATCAAATCCAATATTCCTTAGATTTCCAAATGGTGTTCAACAAGAAATATTTTGGGTGAAGGAGAGTAGTGGtgatattttctttcaaaaaaattgggATCAATTTGCAAAATCTCTCAAATATGGAAATCTCTTAACTTTTAAATACAAGGGTGGATCATGTTTCAAGGTTAAGATATTTTGTGTCAATGCTTTAGAAATAAACTATTCCAATATAAAATCCATAGTAGATGTAGAACAAATTGTTGAAGCTACAAAGGAAGTTAAAGAAACTGTTGAAGTGAGTGATGAAAGTGAAATGCCAATGCAAGCTCAAAGGACAGAAAATGGcaagagaaaaattaatatggATTTAGATTCTACCCAACAAAAATTATCAGGTACAAACAGAGAAGACAAGGTGAAGAAGGCTAAAAAAGGCTCAACAAGTTCTGCAGCTGTTAACATGAGAGACAATAATCAGAATCCCTTTTTTGAAGTTATATTGCCAAAAACTTATGCTAATGGTGGCGAATACTTTAGATTGCCAAAGAAGTTTTCAAGAGAACACTTGAACAAATTTCACGGAATTGCAACCCTATTTGTTGGTGAGGAAATGCCTATGGAAGTGTACATGAGGTTTGATGATAGAACTAGAAGTAAAGCATCATCTATTATGGGTGCCGGTTGGAACTTATTTAGCGAAAAATATAACTTGCAAGTTGGCGATGTTTGTAAGTTTGTGATGACTCGACGCCAACCACCTTTTTTCACTATTACTATTAATCGAGCCATAAAGGAACCAAATCCTGAGAAGTTGCtagGTTATAAAGAAGTGATCTCTTGTGATAATAATGTTGTAAAGAGGGAAGACACTGGAGGAAGTCCGGGTAGCCGTCCaaaagtacattttttttatgGAGATCGTGATGTGATGAAAAATAACATATTCAAGGTTTTGGTGAATGTCAAAATCCCGTTTGTACCAAAGGAGTTTATGAAAAGAGGATGTGGTCATAATTTTGTGGTGTTGAAAATGGGGGGAAAGTCGTGGTCGGTAAAAGTAAAATCTTCTAACAAACTTAGATTGCTCTTTTTTTGTGTATGTTGTCTTGCTATATTCCCCACCTTCGAGGCTAACATAGCTCACTTCGACCCTTACTGGCAAAGTCGATCTCATGAAGCCAAAAAGTCGGCACAAAAGGCTTACAAGCCAAATCCTGTGAATGAAACTGCTAATTTCAATATGCATGTCCACAAGGCTTTTGAAAGTTCCTATGGCACAAGGAGGAGTTTATTAAAAGCCAAACATCACAAGGGTCCGTGCGAAGCAACAAATCCTATCGATAGGTGTTGGAGATGCGATCCACATTGGGAAAAGAACCGTAAGAGGCTAGCAGATTGTGTTATTGGTTTTGGTCACGGCACAACAGGAGGCAAAGCTGGCAGAATTTATGTTGTTACTGATCCATCAGACAATGATCTTGTCAATCCAAAACCAGGGACTTTGCGACATGCAGCCATTCAAAAGGAGCCATTATGGATCATTTTTCAACACAATATGAATATTAAACTGAAGTCAGAGCTTCTACTGACCGATGATAAGACCATAGATGGACGCGGTGTAAACGTTCATATTAGTGATGGTGCTCAAATAACAATGCAATATGTGAAAAACATTATCATTCACGGGTTACATATCCATGATAATAAACCATGCAATGGTGGCCTCATCAGAGACTCGTTGAGTCACTTTGGACAACGTTCGAGGAGTGATGGTGATGGAATTTCAATGTTTGGAGCTTCTCATATTTGGATAGATCATATTTCATTGTGGAATTGTTCTGATGGTTTGATTGACGCCGTAGAGGGATCAACAGCTATTACCATTTCCAATTGCCATATGACGCATCATAACGACGTTATGTTATTTGGAGCAAGTGATACATTCCCAGGAGATGCAATTTCACAAATAACCGTGGCTTTCAACCATTTTGGGAAAGGATTGATACAGAGAATGCCAAGATGCAGATGGGGTTTCTTTCATATTGTTAACAATGACTACACTCATTGGCTTATGTATGCCATTGGAGGTAGCGCACATCCCACCATACTCAGCCAGGGTAACCGGTTTATTGCTCCTCCGGACCGAAATGCAAAAGAGGTGACAAAGAGAGATTATGCACCTGAAAGTGTGTGGAAGAAATGGAGTTGGAGATCAGAGAATGACTTGCTGATGAATGGAGCCTTCTTTGTTCAGTCAGGAACTAAGTGTGCAAATTTTCCAAAGTCAGACATTAAGGCAAAGCCAGGGAGTTTTGCTGCAGCTCTTACTCGCTATgcagTATTGGACTGGACTGAAGCACAATTCCCGGTTGAATCGGTCAGTCCAGTTTCAGAACCATGA 2484 0.3776 MSFQHHPQFHRIILQDKKLRIPKKYVEIFWKGISNPIFLRFPNGVQQEIFWVKESSGDIFFQKNWDQFAKSLKYGNLLTFKYKGGSCFKVKIFCVNALEINYSNIKSIVDVEQIVEATKEVKETVEVSDESEMPMQAQRTENGKRKINMDLDSTQQKLSGTNREDKVKKAKKGSTSSAAVNMRDNNQNPFFEVILPKTYANGGEYFRLPKKFSREHLNKFHGIATLFVGEEMPMEVYMRFDDRTRSKASSIMGAGWNLFSEKYNLQVGDVCKFVMTRRQPPFFTITINRAIKEPNPEKLLGYKEVISCDNNVVKREDTGGSPGSRPKVHFFYGDRDVMKNNIFKVLVNVKIPFVPKEFMKRGCGHNFVVLKMGGKSWSVKVKSSNKLRLLFFCVCCLAIFPTFEANIAHFDPYWQSRSHEAKKSAQKAYKPNPVNETANFNMHVHKAFESSYGTRRSLLKAKHHKGPCEATNPIDRCWRCDPHWEKNRKRLADCVIGFGHGTTGGKAGRIYVVTDPSDNDLVNPKPGTLRHAAIQKEPLWIIFQHNMNIKLKSELLLTDDKTIDGRGVNVHISDGAQITMQYVKNIIIHGLHIHDNKPCNGGLIRDSLSHFGQRSRSDGDGISMFGASHIWIDHISLWNCSDGLIDAVEGSTAITISNCHMTHHNDVMLFGASDTFPGDAISQITVAFNHFGKGLIQRMPRCRWGFFHIVNNDYTHWLMYAIGGSAHPTILSQGNRFIAPPDRNAKEVTKRDYAPESVWKKWSWRSENDLLMNGAFFVQSGTKCANFPKSDIKAKPGSFAAALTRYAVLDWTEAQFPVESVSPVSEP 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03665 827 MobiDBLite consensus disorder prediction 151 181 - -
Tsu04g03665 827 Pfam Pectate lyase 552 737 IPR002022 -
Tsu04g03665 827 Gene3D - 1 96 IPR015300 -
Tsu04g03665 827 Gene3D - 471 809 IPR012334 -
Tsu04g03665 827 CDD B3_DNA 13 94 IPR003340 GO:0003677
Tsu04g03665 827 SMART amb_all 546 743 IPR002022 -
Tsu04g03665 827 ProSiteProfiles B3 DNA-binding domain profile. 191 291 IPR003340 GO:0003677
Tsu04g03665 827 PANTHER PECTATE LYASE 387 808 - -
Tsu04g03665 827 Pfam Pectate lyase, N terminus 406 458 IPR007524 GO:0030570
Tsu04g03665 827 CDD B3_DNA 189 289 IPR003340 GO:0003677
Tsu04g03665 827 SUPERFAMILY Pectin lyase-like 450 785 IPR011050 -
Tsu04g03665 827 SUPERFAMILY DNA-binding pseudobarrel domain 185 287 IPR015300 -
Tsu04g03665 827 PRINTS Pollen allergen Amb family signature 762 786 IPR018082 -
Tsu04g03665 827 PRINTS Pollen allergen Amb family signature 720 739 IPR018082 -
Tsu04g03665 827 PRINTS Pollen allergen Amb family signature 618 639 IPR018082 -
Tsu04g03665 827 PRINTS Pollen allergen Amb family signature 698 717 IPR018082 -
Tsu04g03665 827 PRINTS Pollen allergen Amb family signature 554 570 IPR018082 -
Tsu04g03665 827 PRINTS Pollen allergen Amb family signature 518 543 IPR018082 -
Tsu04g03665 827 PRINTS Pollen allergen Amb family signature 494 511 IPR018082 -
Tsu04g03665 827 PANTHER PECTATE LYASE 18-RELATED 387 808 IPR045032 GO:0030570
Tsu04g03665 827 Gene3D - 166 292 IPR015300 -
Tsu04g03665 827 SUPERFAMILY DNA-binding pseudobarrel domain 6 96 IPR015300 -
Tsu04g03665 827 SMART B3_2 9 96 IPR003340 GO:0003677
Tsu04g03665 827 SMART B3_2 191 291 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03665 Tsu-Chr4 45677609 45684973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03665 391 807 Polysaccharide Lyase AT3G01270 56.360 4.22e-176 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03665 K01728 - gmx:100801864 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g00106 04 1026414 1028550 Tsu04g03665 04 45677609 45684973 ECH
Tsu06g02039 06 25235735 25238559 Tsu04g03665 04 45677609 45684973 ECH
Tsu04g03665 04 45677609 45684973 Tsu04g03665 04 45677609 45684973 ECH