Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03654 atGGCGGGTGGAAGAGTTTTCACTAATGGTCCtgcaaataatatttcaaatatgaATATGTTGTTTcacaatcaacaacaacaacaacaaattcctCGTGCAAATAACACTTCTCAACAACCTCTTGATTctcttttcctttcttcttctaCTTCTGTTCCTTTCTTCGGTTCAAGATCTATGGTGAGTTTTGAAGATGTTCAAGGAGGGAAAAGGTGCAACCGGTCTTTCTTCACCGGATTTGAtcttgatgaaaatggagatgacgAGATGGATGAGTACTTTCATCAATCGGAGAAGAAACGGCGTCTCTCAGTGGATCAAGTTCAGTTTCTTGAGAAAAGCTTTGAAGTTGAGAACAAGCTTGAACCAGATAGGAAAATCAAGATAGCCAAAGACCTTGGTTTGCAGCCACGGCAAGTTGCTATTTGGTTTCAGAACCGCCGTGCAAGGTGGAAGACCAAACAGCTTGAGAAGGATTATGAATCTCTTAATGATAGCTATGAATCTCTTAAGACTGATTATGACAACATCCtcaaagagaaagagagattaCAAGCTGAgGTGGCAAGCCTAACTGAAAAGGTAATTGCAAAAGAGAAACAAGAGGGAAAATTCAAACATGGTGAAAGTGAAACAAAAGAATTACTGCAGAAACCACTATTGAATTCAGTTTCTGAGGGTGAAGGGTCCAAATTGTCAATTGTTGacgctagtaataataataataataataaagttgaaGATATTAGTTCAGCAAGGAGTGACATATTGGATTGTGACAGCCCACGTTACACGGATGGAGTGTTGGAGACATGTGATTCATCTTATGTATTTGAACATGAATATCAATCTGATCTATCACAAGATGAAGAAGACAATTTATTGCCTCCTTATAACAACATCTTTACAAAACTTGAAGATGTTAATTACTCCGACCCGCCACATGGTTCGTCTAGTTTTGGATTTCAAGAGGAAGATCATCATACTCTTTGGCCATGGTCTAACTACTAG 1014 0.3393 MAGGRVFTNGPANNISNMNMLFHNQQQQQQIPRANNTSQQPLDSLFLSSSTSVPFFGSRSMVSFEDVQGGKRCNRSFFTGFDLDENGDDEMDEYFHQSEKKRRLSVDQVQFLEKSFEVENKLEPDRKIKIAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYESLNDSYESLKTDYDNILKEKERLQAEVASLTEKVIAKEKQEGKFKHGESETKELLQKPLLNSVSEGEGSKLSIVDASNNNNNNKVEDISSARSDILDCDSPRYTDGVLETCDSSYVFEHEYQSDLSQDEEDNLLPPYNNIFTKLEDVNYSDPPHGSSSFGFQEEDHHTLWPWSNY 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03654 337 Gene3D - 150 200 - -
Tsu04g03654 337 SUPERFAMILY Homeodomain-like 87 157 IPR009057 -
Tsu04g03654 337 Gene3D - 103 149 - -
Tsu04g03654 337 CDD homeodomain 100 156 IPR001356 GO:0003677
Tsu04g03654 337 PRINTS Lambda-repressor HTH signature 135 151 IPR000047 GO:0003677
Tsu04g03654 337 PRINTS Lambda-repressor HTH signature 126 135 IPR000047 GO:0003677
Tsu04g03654 337 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 30 333 IPR045224 GO:0003700
Tsu04g03654 337 Pfam Homeodomain 100 153 IPR001356 GO:0003677
Tsu04g03654 337 SMART HOX_1 98 159 IPR001356 GO:0003677
Tsu04g03654 337 ProSitePatterns 'Homeobox' domain signature. 130 153 IPR017970 GO:0000981|GO:0006355
Tsu04g03654 337 Pfam Homeobox associated leucine zipper 155 196 IPR003106 GO:0006355|GO:0043565
Tsu04g03654 337 Coils Coil 154 202 - -
Tsu04g03654 337 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54 30 333 - -
Tsu04g03654 337 ProSiteProfiles 'Homeobox' domain profile. 95 155 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03654 Tsu-Chr4 45618097 45619930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03654 57 334 Homeobox Transcription Factor Family AT3G01470 36.879 1.19e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu04g03654 Homeodomain 5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03654 - - mtr:MTR_4g107650 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03654 04 45618097 45619930 Tsu04g03654 04 45618097 45619930 ECH