Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03652 ATGGAAATCACCATTGTAGCTTGTGCTTTCTTACTGATTTTCACAACATTTTTCAACCCTTCTTCTCTTGCTCTCACTCAAGATGGTCAAACGTTGTTGGAGATCAAAAACACCTTTAATGACACTAAGAATGTTCTTAGCAACTGGCAAGAGTTTGATGAGTCTCATTGTGCATGGACTGGAATCTCATGTCATCCTGGTGATGAACAAAGAGTTCGCTCAATAAATCTGCCATATATGCAACTTGGGGGAATAATATCTCCCAGCATTGGTAAACTCAGTAGACTTCAGAGATTGGCGCTTCATCAGAATGGCTTGCATGGAATCATTCCTACTGAGATTACTAATTGTACTGAGCTTAGAGCCCTGTACTTGAGGGCTAATTTTTTCCAAGGAGGGATACCAGCTGGCATTGGAAAcctttcatttttaaatatattGGATGTATCAAGCAATGGATTAAAAGGATCTATTCCTTCCTCTATTGGTCGTCTCTCACATTTGCAAGTTTTGAACCTGTCTACCAATTTCTTTTATGGTGAAATCCCTGACATTGGAGTACTAAGCACCTTCCAGAAGAACTCGTTTTTTGGCAATTCAGATCTTTGTGGTAGGCAAATAGAAAAGCCATGTCGAACATCACTTGGTTTCCCTGTGGTGATACCACATGCCGAAAGTGACGAAGCTGCAGTCCCTACTACCAAAAGATCTTCACATTACATGAAGGCTGTGCTAATTGGGGCAGTGGCAACTTTGGGTCTCGCACTTATCATAACCCTTTCATTACTCTGGATTCGTTCGTCATCAAAGAAGGAAAGAGCTGCTAGGAAGTACACAGAAGTCAAGAAGCAAGTTGATCCATCAGCAAGCGCTAAACTTATTACGTTCCATGGTGATATGCCATACACATCATCTGAAATCATTGAAAAGCTGGAGTCTCTAGATGAAGAGGATATAGTAGGGTCAGGAGGATTCGGCACTGTTTACCGAATGGTGATGAATGATTGTGGTACATTTGCTGTTAAGCGGATTGACCGAAGCCGGGAAGGGTCTGATCAGGTTTTTGAAAGGGAACTAGAGATCTTGGGCAGTATCAAGCACATAAATTTAGTAAATCTACGTGGATACTGCAGGCTACCTTCTTCAAGGCTACTTATCTATGATTATGTGGCCTTAGGCAGCTTAGATGATCTCTTGCATGAAAATACTGAACGACAACCCTTGAATTGGAATGATCGGCTAAAGATAACCCTTGGTTCTGCTCGGGGTTTGGCATACTTGCACCATGAATGTTCCCCGAAAATTGTGCACCGTGACATAAAGTCTAGCAACATCCTTCTTAATGAAAACATGGAGCCTCACATCTCTGATTTTGGTCTTGCAAAGCTCTTGGTTGATGAAGATGCACATGTTACCACGGTGGTTGCTGGCACTTTTGGCTATTTGGCACCAGAGTATCTACAAAGTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCCACTGAGAAGTCAGATGTATACAGCTTTGGAGTTTTATTACTCGAACTTGTAA 1575 0.4038 MEITIVACAFLLIFTTFFNPSSLALTQDGQTLLEIKNTFNDTKNVLSNWQEFDESHCAWTGISCHPGDEQRVRSINLPYMQLGGIISPSIGKLSRLQRLALHQNGLHGIIPTEITNCTELRALYLRANFFQGGIPAGIGNLSFLNILDVSSNGLKGSIPSSIGRLSHLQVLNLSTNFFYGEIPDIGVLSTFQKNSFFGNSDLCGRQIEKPCRTSLGFPVVIPHAESDEAAVPTTKRSSHYMKAVLIGAVATLGLALIITLSLLWIRSSSKKERAARKYTEVKKQVDPSASAKLITFHGDMPYTSSEIIEKLESLDEEDIVGSGGFGTVYRMVMNDCGTFAVKRIDRSREGSDQVFERELEILGSIKHINLVNLRGYCRLPSSRLLIYDYVALGSLDDLLHENTERQPLNWNDRLKITLGSARGLAYLHHECSPKIVHRDIKSSNILLNENMEPHISDFGLAKLLVDEDAHVTTVVAGTFGYLAPEYLQSGXXXXXXXXXXXXXXXXEPLRSQMYTALEFYYSNL 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03652 524 Gene3D Transferase(Phosphotransferase) domain 1 391 496 - -
Tsu04g03652 524 SUPERFAMILY Protein kinase-like (PK-like) 296 490 IPR011009 -
Tsu04g03652 524 ProSitePatterns Protein kinases ATP-binding region signature. 320 342 IPR017441 GO:0005524
Tsu04g03652 524 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Tsu04g03652 524 SMART serkin_6 314 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03652 524 Pfam Protein kinase domain 316 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03652 524 SUPERFAMILY L domain-like 25 188 - -
Tsu04g03652 524 PANTHER RECEPTOR-LIKE PROTEIN 55 2 491 - -
Tsu04g03652 524 PANTHER LRR RECEPTOR-LIKE KINASE 2 491 - -
Tsu04g03652 524 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
Tsu04g03652 524 Gene3D Phosphorylase Kinase; domain 1 273 389 - -
Tsu04g03652 524 ProSiteProfiles Protein kinase domain profile. 314 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03652 524 Gene3D Ribonuclease Inhibitor 25 213 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03652 Tsu-Chr4 45603730 45608023 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03652 10 490 Receptor kinase-like Gene Family AT2G35620 47.925 1.62e-145 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Tsu04g03652 Pkinase 2.7e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03652 - - gmx:100797653 823.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03652 04 45603730 45608023 Tsu04g03652 04 45603730 45608023 ECH