Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03640 atgGGAAATTGCAACGCGTGTATAAACTCAGAAGCAAACGAGTCAAACCGGAAACAAACAACCGAGTCGAACCGAGGAGgaagaaaagcaagaaaaacaaaaccaaatccaTACACAGAACAATCGTTAACTTCAGGAGCACCGATTAAAGTTCTAAAAGAATCAAATCAACGAAATCGAATCGGAGATAAATACGTATTAGGTCGTGAGCTAGGTCGTGGTGAATTCGGCATAACGTATCTTTGTACAGACAAAGAAACGAAAGAGGAATTAGCTTGTAAGTCAATTTCAAAGAGGAAATTAAGAACGGCAGTTGATGTTGAAGATGTTCGCCGTGAAGCGGCGATTATGGCGACGTTACCGGAACATCCTAATGTGGTGAAGTTGAAAGCTActtatgaagatgatgaaaatgTTCATCTTGTTATGGAGTTGTGTGAAGGAGGGGAATTGTTTGATAGGATTGTTGCGAGAGGGCATTATAGTGAACGTGCTGCTGCTCATGTTGCTAGGACGATTGCTGAAGTTGTTAGGATGTGTCATGTTAATGGTGTTATGCATAGAGATCTTAAGCCTGAGAATTTTCTTTTTGCTAATAAGAAAGAAAATTCTGTTCTTAAAGCTATTGATTTTGGTCTCTCGGTTTTCTTCAAGCCTGGGGAGAGATTTTCGGAGATTGTGGGGAGTCCTTACTATATGGCACCAGAGGTTTTGAAGAGGAATTATGGTCCAGAGGTTGATATATGGAGTGCTGGGGtgattttgtatattttgttatgTGGGGTGCCTCCGTTTTGGGCTGAGACGGAACAAGGTGTTGCTTTGGCAATTTTGAGGGGAGTAATTGACTTCAAGAGGGAGCCTTGGCCTCAGATTTCTGACAGTGCTAAGAGCCTTGTGCGTCAGATGTTGGAACCTGATCCTAAAAAACGCTTGACGGCGGAACAGGTGCTCGAACATCCTTGGCTACAAAACGCAAAGAAAGCTTCGAACGTACCATTAGGAGATATTGTGAGGACAAGGCTTAAGCAATTCTCTTTGATGAATAGGTTCAAAAAGAGAGCTCTCCGGGTAATTGCAGAACATTTATCTCTTGAAGAAGTAGAAATAATCAAAGACATGTTTACATTGATGGATACTGACAAAGATGGCAGAATAACATATGAGGAACTGAAGGCCGGTTTGCGGAAGGTTGGTTCGCAACTGGCTGAGCCAGAGATAAAGTTGTTGATGGACGTGGCTGATGTTGATGGGAATGGAGTGCTTGACTATGGAGAGTTTGTAGCTGTGACAATTCACTTGCAAAGAATGGAGAATGACGAGCATTTCCGCAAAGCATTCAAGTTTTTTGACATAGATGAGAGTGAGTATATTGAGTTAAGTGAACTAGAAGCAGCATTAGCAGATGACTTAGGAGAAACTGATACTAATGTACTGAATGAAATCATGCGAGAAGTTGATACTGACAAGGATGGTCGCATCAGTTATGAGGAGTTTGTGGCCATGATGAAAACGGGAACTGATTGGAGAAAAGCATCCAGGCAATATTCTAGGGAAAGATTCAAGAGCCTAAGCATAAACTTGATGAAGGACGGCTCGCTTCAGCTTCATGACGGGATAAGTGGTCAAGCTGTTGTGGTTTGA 1644 0.4057 MGNCNACINSEANESNRKQTTESNRGGRKARKTKPNPYTEQSLTSGAPIKVLKESNQRNRIGDKYVLGRELGRGEFGITYLCTDKETKEELACKSISKRKLRTAVDVEDVRREAAIMATLPEHPNVVKLKATYEDDENVHLVMELCEGGELFDRIVARGHYSERAAAHVARTIAEVVRMCHVNGVMHRDLKPENFLFANKKENSVLKAIDFGLSVFFKPGERFSEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVALAILRGVIDFKREPWPQISDSAKSLVRQMLEPDPKKRLTAEQVLEHPWLQNAKKASNVPLGDIVRTRLKQFSLMNRFKKRALRVIAEHLSLEEVEIIKDMFTLMDTDKDGRITYEELKAGLRKVGSQLAEPEIKLLMDVADVDGNGVLDYGEFVAVTIHLQRMENDEHFRKAFKFFDIDESEYIELSELEAALADDLGETDTNVLNEIMREVDTDKDGRISYEEFVAMMKTGTDWRKASRQYSRERFKSLSINLMKDGSLQLHDGISGQAVVV 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03640 547 ProSitePatterns EF-hand calcium-binding domain. 487 499 IPR018247 -
Tsu04g03640 547 ProSiteProfiles EF-hand calcium-binding domain profile. 438 473 IPR002048 GO:0005509
Tsu04g03640 547 MobiDBLite consensus disorder prediction 1 47 - -
Tsu04g03640 547 ProSiteProfiles Protein kinase domain profile. 65 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03640 547 Pfam EF-hand domain pair 371 430 IPR002048 GO:0005509
Tsu04g03640 547 Pfam EF-hand domain pair 441 504 IPR002048 GO:0005509
Tsu04g03640 547 ProSitePatterns EF-hand calcium-binding domain. 379 391 IPR018247 -
Tsu04g03640 547 Gene3D Transferase(Phosphotransferase) domain 1 151 332 - -
Tsu04g03640 547 Gene3D - 333 507 - -
Tsu04g03640 547 PANTHER BNAA09G44420D PROTEIN 21 523 - -
Tsu04g03640 547 MobiDBLite consensus disorder prediction 1 20 - -
Tsu04g03640 547 CDD STKc_CAMK 64 322 - -
Tsu04g03640 547 Gene3D Phosphorylase Kinase; domain 1 66 150 - -
Tsu04g03640 547 Pfam Protein kinase domain 65 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03640 547 PANTHER SERINE/THREONINE-PROTEIN KINASE 21 523 - -
Tsu04g03640 547 SUPERFAMILY Protein kinase-like (PK-like) 61 331 IPR011009 -
Tsu04g03640 547 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Tsu04g03640 547 MobiDBLite consensus disorder prediction 21 35 - -
Tsu04g03640 547 ProSiteProfiles EF-hand calcium-binding domain profile. 402 437 IPR002048 GO:0005509
Tsu04g03640 547 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524
Tsu04g03640 547 ProSitePatterns EF-hand calcium-binding domain. 415 427 IPR018247 -
Tsu04g03640 547 SUPERFAMILY EF-hand 347 516 IPR011992 -
Tsu04g03640 547 SMART efh_1 370 398 IPR002048 GO:0005509
Tsu04g03640 547 SMART efh_1 478 506 IPR002048 GO:0005509
Tsu04g03640 547 SMART efh_1 442 470 IPR002048 GO:0005509
Tsu04g03640 547 SMART efh_1 406 434 IPR002048 GO:0005509
Tsu04g03640 547 ProSiteProfiles EF-hand calcium-binding domain profile. 366 401 IPR002048 GO:0005509
Tsu04g03640 547 SMART serkin_6 65 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03640 547 ProSiteProfiles EF-hand calcium-binding domain profile. 474 509 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03640 Tsu-Chr4 45475415 45480056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03640 1 547 EF-hand Containing Proteins AT1G74740 78.102 0.0 899
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Tsu04g03640 Pkinase 1.4e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03640 K13412 - gmx:100800559 933.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03640 04 45475415 45480056 Tsu04g03640 04 45475415 45480056 ECH