Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03631 ATGGTTCAAATTTTGCAAGACTTAAGAATCAATCATGAGGCCTATTCTGATGAAAGGCCATTAACATTCCTTAAGTACAACAGGGATGGCGATCTTCTATTTTCTTGCGCCAAAGACCACAACCCCACCGTCTGGTTTGCTGACAATGGTGAACGCTTAGGAACTTATCGAGGTCATAATGGTGCTGTTTGGTGCTGCGATGTCACAAGAGATTCGGGTCGACTGATTACCGGAAGCGCTGACCAGACGGCGAGGCTGTGGAATGTGGAAACTGGTCAACAGTTGTTCACTTTCAATTTTGATTCCCCCACAAAGTCCGTTGACTTTTCTGTAGGTGATAAGCTTGCAGTCATCACCACCGACCCCTTTATGGAACGTTCTTCAGCAATCCATGTCAAAGGCATTGCTAAAGATCCTGCAGACCAAACTGAGGAGTCTTTGCTTGTGATTAAGGGACCACAGGGTAGAATCAATAGAGCCATTTGGGGACCCCTCAATGAAACCATTATCAGTGGTGGAGAAGACTCTGTCATTAGAATTTGGGATTCTGAGACTGGAAAACTAGTTAAGGAAACAGACGAGGAATCTGGCCACAAAAAGTCAATAACATCACTTGTTAAATCTGCTGATGGATCACATTTCCTAACCGGCTCCCTTGATAAGTCTGCTAAGCTTTGGGATAGCAGAACATTGACTCTTGTCAAGACATATGTGACTGAGAGCCCTGTCAATGCAGTTGCAATGTCTCCGCTTCTTCATCATGTGGTTCTTGGAGGTGGTCAGGAGGCATCGGCTGTTACAACTACTGATCATCGTGCTGGAAAATTTGAAGCCAAGTTCTATCATAAGatTATTCAAGAAGAAATTGGGGGTGTGAAAGGACATTTTGGACCGATTAATGCACTCGCCTTTAACCCCGATGGAAAAAGtttttcGAGTGGAGGTGAAGATGGATACATACGTTTGCATCATCTTGACGCAGAATATTTCAGTATCAAACTTTAG 1005 0.4378 MVQILQDLRINHEAYSDERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDVTRDSGRLITGSADQTARLWNVETGQQLFTFNFDSPTKSVDFSVGDKLAVITTDPFMERSSAIHVKGIAKDPADQTEESLLVIKGPQGRINRAIWGPLNETIISGGEDSVIRIWDSETGKLVKETDEESGHKKSITSLVKSADGSHFLTGSLDKSAKLWDSRTLTLVKTYVTESPVNAVAMSPLLHHVVLGGGQEASAVTTTDHRAGKFEAKFYHKIIQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYIRLHHLDAEYFSIKL 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03631 334 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 56 93 - -
Tsu04g03631 334 ProSitePatterns Trp-Asp (WD) repeats signature. 169 183 IPR019775 -
Tsu04g03631 334 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 17 333 - -
Tsu04g03631 334 ProSiteProfiles Trp-Asp (WD) repeats profile. 195 236 IPR001680 GO:0005515
Tsu04g03631 334 PRINTS G protein beta WD-40 repeat signature 214 228 IPR020472 -
Tsu04g03631 334 PRINTS G protein beta WD-40 repeat signature 169 183 IPR020472 -
Tsu04g03631 334 PRINTS G protein beta WD-40 repeat signature 75 89 IPR020472 -
Tsu04g03631 334 ProSiteProfiles Trp-Asp (WD) repeats profile. 292 322 IPR001680 GO:0005515
Tsu04g03631 334 Gene3D - 16 334 IPR015943 GO:0005515
Tsu04g03631 334 ProSitePatterns Trp-Asp (WD) repeats signature. 75 89 IPR019775 -
Tsu04g03631 334 CDD WD40 20 322 - -
Tsu04g03631 334 Pfam WD domain, G-beta repeat 51 88 IPR001680 GO:0005515
Tsu04g03631 334 Pfam WD domain, G-beta repeat 196 227 IPR001680 GO:0005515
Tsu04g03631 334 Pfam WD domain, G-beta repeat 291 322 IPR001680 GO:0005515
Tsu04g03631 334 Pfam WD domain, G-beta repeat 150 182 IPR001680 GO:0005515
Tsu04g03631 334 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 150 187 - -
Tsu04g03631 334 SMART WD40_4 285 324 IPR001680 GO:0005515
Tsu04g03631 334 SMART WD40_4 49 88 IPR001680 GO:0005515
Tsu04g03631 334 SMART WD40_4 185 227 IPR001680 GO:0005515
Tsu04g03631 334 SMART WD40_4 7 46 IPR001680 GO:0005515
Tsu04g03631 334 SMART WD40_4 143 182 IPR001680 GO:0005515
Tsu04g03631 334 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 17 333 - -
Tsu04g03631 334 Hamap Eukaryotic translation initiation factor 3 subunit I [EIF3I]. 18 334 IPR027525 GO:0003743|GO:0005737|GO:0005852
Tsu04g03631 334 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 195 230 - -
Tsu04g03631 334 SUPERFAMILY WD40 repeat-like 8 322 IPR036322 GO:0005515
Tsu04g03631 334 ProSiteProfiles Trp-Asp (WD) repeats profile. 150 191 IPR001680 GO:0005515
Tsu04g03631 334 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 292 322 - -
Tsu04g03631 334 ProSiteProfiles Trp-Asp (WD) repeats profile. 56 97 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03631 Tsu-Chr4 45399424 45402026 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03631 18 334 Eukaryotic Initiation Factors Gene Family AT2G46290 77.743 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03631 K03246 - gmx:100793485 590.882