Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03626 ATGGAACCTCCTCTCATCAACGACTCCACTTTCTCTTCAACCAACCCTTCTTTGTCAGAAATTTGGCCTCATTTCCCTCCACAAAAcaataagaaaagaaaactaGGACCAGCAGCAGCTTCCTCTCAAGACACAACTACCTCAGTTGTACTAGTAGTAGCTGGTAGTAATGGTGATAGCAGTAACAACAATTCACCAGAGGAACAGAAACAACCTTCTTCTGAGACACATCTTCCTAAGCAAGACTATATTCATGTCAGAGCCAGAAGAGGCCAAGCCACTGATAGCCATAGTCTTGCTGAAAGAGCAAGAAGAGAAAAGATTAGTGAGAGGATGAAAATTCTACAAGATTTAGTTCCAGGATGTAACAAGGTAATTGGTAAAGCACTTGTGTTGGATGAGATAATCAATTATATTCAATCACTGCAAAGCCAAGTTGAGtTCCTTTCAATGAAGCTTGAAGCAGTTAATTCGAGATTAAATATGAACCCCTATATCGAGTGTTTCCCTTCAAAAGATGTTGGGGCTCAGCCATTTGACCTTTCTGGAATAATATTTGGACCACAAGCAAGCCGGGGATATGCTCAGGGATCACAACCAGGGTGGCTACATATGCAGATAACTGGAGGTTTCAATAAAGCATCGTAA 648 0.4043 MEPPLINDSTFSSTNPSLSEIWPHFPPQNNKKRKLGPAAASSQDTTTSVVLVVAGSNGDSSNNNSPEEQKQPSSETHLPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQSQVEFLSMKLEAVNSRLNMNPYIECFPSKDVGAQPFDLSGIIFGPQASRGYAQGSQPGWLHMQITGGFNKAS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03626 215 MobiDBLite consensus disorder prediction 1 24 - -
Tsu04g03626 215 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 63 214 IPR024097 GO:0006355
Tsu04g03626 215 Pfam Helix-loop-helix DNA-binding domain 96 143 IPR011598 GO:0046983
Tsu04g03626 215 Gene3D - 89 165 IPR036638 GO:0046983
Tsu04g03626 215 MobiDBLite consensus disorder prediction 1 79 - -
Tsu04g03626 215 PANTHER BNAC05G07950D PROTEIN 63 214 - -
Tsu04g03626 215 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 92 142 IPR011598 GO:0046983
Tsu04g03626 215 CDD bHLH_AtBPE_like 82 165 - -
Tsu04g03626 215 MobiDBLite consensus disorder prediction 35 78 - -
Tsu04g03626 215 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 90 162 IPR036638 GO:0046983
Tsu04g03626 215 SMART finulus 98 148 IPR011598 GO:0046983
Tsu04g03626 215 Coils Coil 139 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03626 Tsu-Chr4 45363136 45365336 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03626 79 215 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 66.423 5.24e-61 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu04g03626 HLH 1.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03626 - - gmx:100799646 304.293