Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03621 ATGTCTTCTCCCTCCACCGCTGCCGTCTCCGGCGAATTCATGCTCTTCGGAGTTAGAGTCGTCGTTGATTCCATGAGAAAGAGTGTCAGTATGAACAATCTCTCACAGTACGAACAACCTCAAGACAAcaacaatatcatcatcaaGAATGATAACAACAAAGAAGTTCTCGCCGCCGGTTATGCCTCCGCCGATGACGCCGTTCCTGATAACTCCGGCAGAAACCGCGATCGCGAACGTAAACGAGGGATTCCATGGACAGAGGAAGAGCACAAGTTGTTTTTGGTTGGATTGCAGAAAGTAGGGAAAGGTGATTGGAGAGGAATCTCAAGAAACTACGTCAAAACTCGAACGCCAACGCAGGTTGCAAGCCATGCTCAAAAGTACTTTCTCCGCCGGAGTAATCTCAATCGCCGTCGCCGTAGATCCAGCCTCTTTGATATCACAACCGACACGGTGTCTGCAATTCCAATGGAGGAAGAACAGGTCAAGAATCAAGATAGTGTTTCTCAATCACAGCCTATGTGCCCTGCAGCCCCTGAACCTAGAAAAAACAATGGATTTCCTTTTATGTCAATATTTGAGTTGGGTGTTAATGAGAGTCCAATGGAAGAACTCACTCTTGGACAAGGAAATGTGAAACACAATTTCCCAACCAACAATCTATTCAATCCAATTCCTTTTGTTGGTTCAGATCCTAAAGTTTCCACTGTCTCTGACATCACCTCAAGTTCTAGTTCATCAATTGACCCTCCAACACTTTCCCTTGGATTGTCCTTCTCATCTGATCAAAGGAAGACATCATCAACACACTCAGCTTTACATGCAATGCCATGTTTCAACAATGGAGACAACATCATAAgtgttgcttaa 873 0.4364 MSSPSTAAVSGEFMLFGVRVVVDSMRKSVSMNNLSQYEQPQDNNNIIIKNDNNKEVLAAGYASADDAVPDNSGRNRDRERKRGIPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVSAIPMEEEQVKNQDSVSQSQPMCPAAPEPRKNNGFPFMSIFELGVNESPMEELTLGQGNVKHNFPTNNLFNPIPFVGSDPKVSTVSDITSSSSSSIDPPTLSLGLSFSSDQRKTSSTHSALHAMPCFNNGDNIISVA 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03621 290 MobiDBLite consensus disorder prediction 161 175 - -
Tsu04g03621 290 Pfam Myb-like DNA-binding domain 85 130 IPR001005 -
Tsu04g03621 290 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 81 132 IPR006447 GO:0003677
Tsu04g03621 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 134 IPR017930 -
Tsu04g03621 290 MobiDBLite consensus disorder prediction 61 83 - -
Tsu04g03621 290 SMART sant 82 132 IPR001005 -
Tsu04g03621 290 SUPERFAMILY Homeodomain-like 80 135 IPR009057 -
Tsu04g03621 290 Gene3D - 84 136 - -
Tsu04g03621 290 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 11 290 - -
Tsu04g03621 290 MobiDBLite consensus disorder prediction 161 184 - -
Tsu04g03621 290 CDD SANT 85 130 IPR001005 -
Tsu04g03621 290 ProSiteProfiles Myb-like domain profile. 78 130 IPR001005 -
Tsu04g03621 290 PANTHER KIN2 11 290 - -
Tsu04g03621 290 ProSiteProfiles SANT domain profile. 86 134 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03621 Tsu-Chr4 45287771 45290270 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu04g03621 Myb_DNA-binding 1.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03621 - - gmx:778059 363.614