Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03616 ATGGCTGCCGCCGGCGAGATTTTCCGGTCGAATTTGACGGAATTGTTGGAGGAATCACATTCAGGTGATGATGAATTGCATGTGCTGGCTGTTGATGATAGTCTTGTTGATCGTAAAGTCATTGAACGTTTGTTGAAGATTTCTTCATGCAAAgTTACGGTTGTGGAAAGTGCAAGAAGAGCTCTTCAGTATTTGGGATTGGATGGAGATGGAGAGAATAGTGATATTGGTTTTGATGGTGTGAAGGTTAATTTGATAATGACTGATTATTCGATGCCTGGGATGACGGGATATGAACTATTGAAGAAAATCAAGCAGGAGTCTTCTGTTTTTAGGGAGATTCCAGTGGTGATCATGTCGTCGGAGAATGTCTTAACTCGAATTGATagGTGCCTTGAGGAAGGAGCCGAGGATTTTCTATTGAAGCCAGTCAAGTTATCAGATGTAAGACGCTTGAAAGATTTTATCATGAGAGGTGAAGTGAAGGATGGTGAGAAAAGTTCTCTCAAACGAAGGCGATCATCGGATGATTGCACTCCATCTCTATCAACGACATTCTCACCAATGCGCCATTTGTGCGACCCACCATCATCAGTTTTCTCACCACTCTCACCATCCACATTATCCTCTAAGAAATCTAGACTGTGA 648 0.4213 MAAAGEIFRSNLTELLEESHSGDDELHVLAVDDSLVDRKVIERLLKISSCKVTVVESARRALQYLGLDGDGENSDIGFDGVKVNLIMTDYSMPGMTGYELLKKIKQESSVFREIPVVIMSSENVLTRIDRCLEEGAEDFLLKPVKLSDVRRLKDFIMRGEVKDGEKSSLKRRRSSDDCTPSLSTTFSPMRHLCDPPSSVFSPLSPSTLSSKKSRL 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03616 215 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 215 IPR045279 GO:0009736
Tsu04g03616 215 ProSiteProfiles Response regulatory domain profile. 27 157 IPR001789 GO:0000160
Tsu04g03616 215 Gene3D - 26 189 - -
Tsu04g03616 215 SMART REC_2 26 153 IPR001789 GO:0000160
Tsu04g03616 215 Pfam Response regulator receiver domain 28 150 IPR001789 GO:0000160
Tsu04g03616 215 CDD REC_typeA_ARR 28 152 - -
Tsu04g03616 215 SUPERFAMILY CheY-like 25 153 IPR011006 -
Tsu04g03616 215 MobiDBLite consensus disorder prediction 166 189 - -
Tsu04g03616 215 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-LIKE PROTEIN 8 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03616 Tsu-Chr4 45213244 45215367 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03616 26 182 Response Regulator Gene Family AT3G48100 71.975 2.80e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu04g03616 Response_reg 1.5e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03616 K14492 - gmx:100527518 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03616 04 45213244 45215367 Tsu03g02204 03 23901138 23903731 ECH
Tsu04g03616 04 45213244 45215367 Tsu04g03616 04 45213244 45215367 ECH