Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03614 ATGGCTTCTTCCTCAGATCCTCCTCCTTCTTCCAGACACCATACTTACGACCGTAAACAAAAATCCCTCGGCCTCTTATGCACCAATTTCTTGAGCTTGTACAATCGTGACGACGTTCGTGTAGTCGGTCTCGACGATGCCGCGGCTCGATTAGGTGTTGAGAGAAGACGGATCTATGATATTGTTAATGTTTTGGAGAGCATCGGGgTTCTTGCTAGAAAGGCTAAGAATCAGTATACATGGAAAGGGTTTGGGGCAATTCCTGTTGCTTTGCAGGAGCTCAAGGAAGAGGGTTTATGGCAGAATGTCAATTCTTCACAGGAGGGTGGGAATGAAGATACAAAGGTATCTGAtgaagaggatgaagatgaaCCATTATCACAACCCACTGGAAGTCAGAGTGAATCATTATCCCAAACTAATGGAAGTCAGAGTGACCATTTGAACCCTAATTCTGCTTTTTCCAGATCTCTGAAAAatgATAGAAGGGAAAAATCTCTGGCGCTGCTTACTCAGAATTTTGTCAAGCTATTTGTCTGCTCAAATCTGGAAATGATATCCCTTGATGATGCTGCAAGGTTGTTGCTTGGAGATGCATATAATTCATCAACAATGAGAACTAAAGTTAGGCGCCTTTATGATATTGCAAATGTGCTAACCTCCATGAACCTTATTGAGAAGACCCATACCACAGATACAAGAAAACCAGCATTCAGGTGGCTAGGCTTAAGAGGGAAGACATGGAATGAGGCATCACTTTAcaattcaaaacaaaatgaGTCTAGGAAAAGGGCATTTGGAAATGATGTCACAAACATTAGCTTTGCGCGGGGGAACAGAACGGATTTGTTCATGGGTGGGGACTTCAGCCAGAACCTTAAGAAGCAAAAGATGGAAAATGATAGTGGGCTGTGTCAGGATGACAAGAACAATatgaaacaaaaacagaacTATCAGTTTGGTCCTTTCGCTCCAGCCTTTGTATCCAAAGCCGGATCCTCAGAGAACAAAGTGAAGCAGGTGCATGACTGGGAGAGTCTCGCAACTGAGCATTGCCCTCAGTATCAAAATCAAGCTTTGAAAGAACTCTACTCTCATTACATGGAAGCATGGAAATCTTGGTACTCTGAAGTTGCTGGAAAGAGATCTACTCAAGTACTGTAA 1164 0.4124 MASSSDPPPSSRHHTYDRKQKSLGLLCTNFLSLYNRDDVRVVGLDDAAARLGVERRRIYDIVNVLESIGVLARKAKNQYTWKGFGAIPVALQELKEEGLWQNVNSSQEGGNEDTKVSDEEDEDEPLSQPTGSQSESLSQTNGSQSDHLNPNSAFSRSLKNDRREKSLALLTQNFVKLFVCSNLEMISLDDAARLLLGDAYNSSTMRTKVRRLYDIANVLTSMNLIEKTHTTDTRKPAFRWLGLRGKTWNEASLYNSKQNESRKRAFGNDVTNISFARGNRTDLFMGGDFSQNLKKQKMENDSGLCQDDKNNMKQKQNYQFGPFAPAFVSKAGSSENKVKQVHDWESLATEHCPQYQNQALKELYSHYMEAWKSWYSEVAGKRSTQVL 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03614 387 Gene3D - 13 86 IPR036388 -
Tsu04g03614 387 Gene3D - 157 244 IPR036388 -
Tsu04g03614 387 SMART E2F_TDP_2 162 242 IPR003316 GO:0005667|GO:0006355
Tsu04g03614 387 SMART E2F_TDP_2 18 83 IPR003316 GO:0005667|GO:0006355
Tsu04g03614 387 Pfam E2F/DP family winged-helix DNA-binding domain 164 242 IPR003316 GO:0005667|GO:0006355
Tsu04g03614 387 Pfam E2F/DP family winged-helix DNA-binding domain 19 83 IPR003316 GO:0005667|GO:0006355
Tsu04g03614 387 SUPERFAMILY "Winged helix" DNA-binding domain 17 81 IPR036390 -
Tsu04g03614 387 MobiDBLite consensus disorder prediction 127 156 - -
Tsu04g03614 387 MobiDBLite consensus disorder prediction 102 157 - -
Tsu04g03614 387 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 10 378 - -
Tsu04g03614 387 SUPERFAMILY "Winged helix" DNA-binding domain 164 243 IPR036390 -
Tsu04g03614 387 PANTHER TRANSCRIPTION FACTOR E2F 10 378 IPR015633 GO:0000978|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03614 Tsu-Chr4 45191254 45194880 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03614 13 379 E2F-DP Transcription Factor Family AT3G48160 55.053 4.10e-124 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Tsu04g03614 E2F_TDP 1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03614 K09391 - gmx:100795252 516.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03614 04 45191254 45194880 Tsu04g03614 04 45191254 45194880 ECH