Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03600 ATGACTAGAGGAAAGGTGAAACTTTCTTTCATTGTCAATGATGATGCAAGGAAAGCAACATATAAAAAAAGGAAGAACAATCTATTGAAGAAGGTCGATGAACTAAGCATCCTTTGCGGAATCGAAGCATGTGCTATAGTTTATGGCCCTTATGAGCCTGAACCTGAGATTTGGCCAACACCGCAGGGAGTCCAACGTGTGCTCTCAAAATTCAGGGCAAAGCCTGAATTtgagaagacaaaaaaaatggttaatcaAGAGGCTTTCATGAGACAAAGAGTAATGAAGGCCGAGGAACAACTAAGGAGATTGAGGAAAAACAACAGAGATATAGAGATGGAAAATCTCATGTCTCAATGTATTAAAGAAGGCAAGGTTGTGCACAATAATATGTCAATGCATGATTTGAATGCTCTTACTTGGTTGATTGACCAAAATTTGAAGGACATCAGTAGAATGGAAGCAAAGGTTAATAATGGTCAACgtcaaacaacaaaaacatcaagCAATGAAGAAATGACAATGGTGATGGGTGATGGCCATGTTGAGATGGTCATAAATAATGATGACATTATGCAAGAGAAGTTATTTATGGACATGATGATTAATGGTAATGTGGATAAGACAATTCCATTTATTTAA 642 0.3474 MTRGKVKLSFIVNDDARKATYKKRKNNLLKKVDELSILCGIEACAIVYGPYEPEPEIWPTPQGVQRVLSKFRAKPEFEKTKKMVNQEAFMRQRVMKAEEQLRRLRKNNRDIEMENLMSQCIKEGKVVHNNMSMHDLNALTWLIDQNLKDISRMEAKVNNGQRQTTKTSSNEEMTMVMGDGHVEMVINNDDIMQEKLFMDMMINGNVDKTIPFI 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03600 213 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu04g03600 213 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu04g03600 213 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Tsu04g03600 213 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Tsu04g03600 213 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 172 - -
Tsu04g03600 213 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Tsu04g03600 213 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Tsu04g03600 213 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tsu04g03600 213 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu04g03600 213 Coils Coil 87 114 - -
Tsu04g03600 213 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03600 Tsu-Chr4 45080607 45081248 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03600 1 184 Type I MADS-box Gene Family AT5G48670 48.649 3.40e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu04g03600 SRF-TF 2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03600 - - mtr:MTR_4g032620 229.95