Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03597 ATGAAATCTGCAGCAAGAGGGTTCAAATCTGATACATTACTTGGTGAAGGTGGTTTTGGAAAAGTTTATAAAGGTTGGTTAGATGAGAAAACTCTTGCTCCTGCAAAAGCTAGTTCTGGAATGATGGTTGCcattaaaaaattgaactcTGAAAGTACTCAAGGTTTTCAAGAATGGCAGTCAGAAGTGAATTTTTTAGGAAGACTTTCTCACCCAAACTTGGTGAAGCTATTGGGTTACTGTTGGGAAGATGAAGAGCTTCTTCTTGTGTATGAGTTCATGCCAAAAGGAAGTTTGGAGAATCATCTCTTCAGAAGAAATCCTAACATTGAACCACTTTCTTGGAACACAAGAATCAAAATAGCTATTGGTGCAGCTAGGGGTTTGGCTTTCTTGCATGATTCTGAAAAGCAAGTCATATACAGAGATTTCAAGGCCTCCAATATACTCCTTGATTTGAATTATAATGCAAAAATCTCAGATTTTGGATTAGCTAAATTGGGACCTTCTGGGGGACAATCACATGTAACTACAAGGGTCATGGGCACATATGGTTATGCTGCCCCAGAATACATTGCAACAGGGCACTTGTATGTGAAGAGTGATGTGTATGGCTTTGGTGTGGTGTTGTTAGAGATAATGACAGCCATGAGAGCATTGGACACAAAAAGGCCATCAGGGCAACAAAACTTGGTGGAATGGGTGAAACCTTTTCTCTccaataagaaaaaattgaaaggcATAATGGATGCTAGAATAGAAGGACAATACTCACCAAAAGCAGCAATACAAGCAGCACAACTTTCACTTAAATGTTTAGAAAATGACCCTAAACAACGTCCTTCTATGAAAGAAGTACTTGAGTCATTAGAAGCTATTGAAGCCATTCAGGTTAAATCCAAGGAATCTAAAAACAACATTTCTCATCAAGCTCCTGTTGTTCAAGCTGCTAGGCACCATAGAGCTGTaaaaTCAAATTGGAATCTTCAAAACACCAACACTGTTTCTCGCCGCCGCCACTCTTTCTTCGTCGTTGATCGCCACCAAACAGGTTTATCTCAGACCCTACATGTTTCTTTATTGAACACACCAATGCAGAAAAGTTCGGGAGGTATAACAAGCCAATTGCTTGGAGGTTTATGTTGTTATCTTAGAAGATGCATATTTTCTGTTTTGTCAGTTGGTCCTTTACCAAACCATATTGCTTTCATAATGGATGGGAATCGAAGGTATGCAACGAAGAGAAACTTGGGAGACGGTGGTGGCCATAAGGCTGGATTTTCAGCTCTATTGTCCATCCTTAGATACTGTTATGAATTGGGAATTAAGTATGTATCTGTCTATGCATTTAGCATCGATAACTTCAGAAGGAAACCTAAAGAGGTTCAATCAGTCATGGACTTGATGCGAGAAAAGATCGAGGAGTTGCTTCAACAGGAAAGCATTATCAATGAATACGGCATTCGAATACATTTCATTGGAAACATGCAACTATTGACTGAGCCTGTCAGGGTTGCTGCAGAAAAGGCAATGAGAGTTACTGCCAAGAACCAAGAGAGAGTTCTTTTAATCTGCATTGCTTATACTTCAACTGATGAGATTGTGCATGCTGTTCAAGAATCCTGCAAGGATAAATGGAATGAAATTCAAGCATCCAAGGAAGGTAAGGTTTCCAACGGGGTCTCCAAAAAAAATGGTCTTGATTTGCATTTTTGCAATTCATGTAGAGATAACGCAACCGAAGCTTGTAGTAGTCTACATGAAGGAGTCAAAGGTGCTGGAGAGAAAGATGCTTTGTTAGAGCAAAACGGTGAAAAACATAGCGGTAATTACAGTGAAGGTGAAATCACATCTTGTAACGGGATTGTTGAAATAACTGAAGAGAGAAAGTACAAGCAGGGTGAGACTGCTATAAAACTAGTTGATATTGAAAAGCACATGTATATGGCAGTGGCACCTGATCCAGATATCTTGATCAGAACTTCTGGAGAGGCTCGTCTTAGTAATTTTCTTCTTTGGCAGACCAGTGCATGCCCTTTGTATGCACCAAAAGTACTTTGGCCTGAAATTGtGACAATTCAATTCAAACCTACTTCTAGCTCTTCTCATCACCACCACCATAATCACTTAAAATCTCTTCACTTTTCACTTTACCAACATGAAACAATAAACAAAACAGGATATATCATAGTGAATGGTATCAAAGAAAGTGCTGGAGTAACTGAAACTACAACACCTTTTGGAACATTATTTGTGTTTCAAGATCCTTTAACTCTTACATCAAATAGATCCTCCAAACTTGTTGGAATTGCTGAAGGTACTTCAATCACATCTAGTCTTGACGGGCTTCAAAGCATTTCAATTGCGAAATTAACTGTTCGGGTGAAAGGTTATAAGGGTTCGGTTTCTATTGTTGGTGGAACAAACAATATTAAAGCCTCGGATCATCCAATTGTTGGAGGTACCGAAGATTTCTTGTTTGTTCAAGGATATGTTACCTCTTCTCCCGTTGATCTTAAGGGTATTACGGTTACTTATAAGATTGAGTTTCATATTTATTGGCCTCCTTATGCAATTCAATCCTCATAA 2589 0.3843 MKSAARGFKSDTLLGEGGFGKVYKGWLDEKTLAPAKASSGMMVAIKKLNSESTQGFQEWQSEVNFLGRLSHPNLVKLLGYCWEDEELLLVYEFMPKGSLENHLFRRNPNIEPLSWNTRIKIAIGAARGLAFLHDSEKQVIYRDFKASNILLDLNYNAKISDFGLAKLGPSGGQSHVTTRVMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEIMTAMRALDTKRPSGQQNLVEWVKPFLSNKKKLKGIMDARIEGQYSPKAAIQAAQLSLKCLENDPKQRPSMKEVLESLEAIEAIQVKSKESKNNISHQAPVVQAARHHRAVKSNWNLQNTNTVSRRRHSFFVVDRHQTGLSQTLHVSLLNTPMQKSSGGITSQLLGGLCCYLRRCIFSVLSVGPLPNHIAFIMDGNRRYATKRNLGDGGGHKAGFSALLSILRYCYELGIKYVSVYAFSIDNFRRKPKEVQSVMDLMREKIEELLQQESIINEYGIRIHFIGNMQLLTEPVRVAAEKAMRVTAKNQERVLLICIAYTSTDEIVHAVQESCKDKWNEIQASKEGKVSNGVSKKNGLDLHFCNSCRDNATEACSSLHEGVKGAGEKDALLEQNGEKHSGNYSEGEITSCNGIVEITEERKYKQGETAIKLVDIEKHMYMAVAPDPDILIRTSGEARLSNFLLWQTSACPLYAPKVLWPEIVTIQFKPTSSSSHHHHHNHLKSLHFSLYQHETINKTGYIIVNGIKESAGVTETTTPFGTLFVFQDPLTLTSNRSSKLVGIAEGTSITSSLDGLQSISIAKLTVRVKGYKGSVSIVGGTNNIKASDHPIVGGTEDFLFVQGYVTSSPVDLKGITVTYKIEFHIYWPPYAIQSS 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03597 862 PANTHER SERINE/THREONINE-KINASE CX32, RELATED PROTEIN 1 306 - -
Tsu04g03597 862 CDD Cis_IPPS 400 689 IPR001441 GO:0016765
Tsu04g03597 862 ProSitePatterns Undecaprenyl pyrophosphate synthase family signature. 656 673 IPR018520 GO:0016765
Tsu04g03597 862 PANTHER OS01G0588500 PROTEIN-RELATED 1 306 - -
Tsu04g03597 862 ProSitePatterns Protein kinases ATP-binding region signature. 14 47 IPR017441 GO:0005524
Tsu04g03597 862 SUPERFAMILY Undecaprenyl diphosphate synthase 394 695 IPR036424 GO:0016765
Tsu04g03597 862 Gene3D Phosphorylase Kinase; domain 1 1 93 - -
Tsu04g03597 862 Pfam Putative undecaprenyl diphosphate synthase 404 697 IPR001441 GO:0016765
Tsu04g03597 862 ProSiteProfiles Protein kinase domain profile. 8 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03597 862 SUPERFAMILY Protein kinase-like (PK-like) 5 291 IPR011009 -
Tsu04g03597 862 Gene3D - 382 698 IPR036424 GO:0016765
Tsu04g03597 862 Pfam Dirigent-like protein 714 853 IPR004265 -
Tsu04g03597 862 Pfam Protein tyrosine and serine/threonine kinase 11 290 IPR001245 GO:0004672|GO:0006468
Tsu04g03597 862 TIGRFAM uppS: di-trans,poly-cis-decaprenylcistransferase 397 550 IPR001441 GO:0016765
Tsu04g03597 862 CDD STKc_IRAK 14 293 - -
Tsu04g03597 862 Gene3D Transferase(Phosphotransferase) domain 1 94 318 - -
Tsu04g03597 862 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Tsu04g03597 862 Hamap Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 397 711 IPR001441 GO:0016765
Tsu04g03597 862 Gene3D - 699 852 IPR044859 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03597 Tsu-Chr4 45032745 45046838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03597 1 290 Glycoside Hydrolase AT3G07070 50.515 1.23e-92 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Tsu04g03597 Prenyltransf 7e-70 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03597 - - gmx:100794193 558.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03597 04 45032745 45046838 Tsu04g03597 04 45032745 45046838 ECH