Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03596 ATGGGAGGTGACGGTGTTGTTGCGGCGGAATCGAATACCGAACTTGATACCGTTAACATCAACGTTCGATGCTCGAACGGTTCAAAGTATTCGGTTCGTGTTTCTCTCGATTCCACCGTTGGATccttcaaagatctcattgcgCAAAACTGTGATATCCCCGCACAACAACAACGTCTCATTTACAAGGGTCGTATATTGAAGGACGATCAAACTCTTCAAAGCTATGGTTTGGAGGCAGATCATGCCGTGCATTTGGTTCGTAGCTTTGCACCTACAAATGCGAGTGGTGGGACCAATAGTAGTGGCACCAATACCACACCGAATGATGCGGCAGGTGCTGGAGCTAGAGCTAACGATGCTGGGGGTTTAGGAGGGCTCGGTTTTGGAGGAGCTTCACTGTTTCCTGGACTTGGTAACAATGGCACTGGGGGAAATGGCTTATTTGGCGAGGGATTTCCAGATCTTGAACAAATGCAGCAACCATTTATTTCAAACCCCAATTTAATGAGAGAAATGATGAATTCACCTGCTATGCAGAATCTAGTAAGTAATCCTGAGATAGTGCGGAATCTTATAATGAACAACCCACAGATGCAAGAGCTAATGGATCGTAACCCCGAGCTAGCACACATACTTAATGATCCAAGCACTCTCCGCCAGACCCTTGAAGCTACGAGGAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGACAGGGCAATGAGCAACATTGAATCTTCTCCCGAGGGATTCAACATGTTGAGGCGCATGTATGAAAACGTTCAAGAACCATTTTTAAATGCCACTACAATGGCCGGTAATACAGGAATTTCAGCAACTCGGGACCAATCAACTAATCCCTCTACCACTAGTTCTGAAACAAATGCTGGTTCTCCCATACCCAATGCTAACCCACTTCCTAATCCTTGGTCCTCTACAGGAACTGGAGTTCCCCAAACTAACACCAGAAGATCAACCACTGGTGGGGATGCTAGACAGCAAGCACCTACTGGCTTAGGAGGTCTTGGTTTGCCTGGCCTTGAAGGCATGCTGGGTGGCAGTGGTATGCCAGATCCTGCTTTATTGACCCAATTAATGCAAAATCCAGCTATCTCACAAATGATGCAAAGTATGCTTTCCAACCCGCAAACTTTGAGTCAGattcttGGTGCTGCTAATACTGAACAACGTGGCATGCCTGATTTAAATTCTCTTAGAGATGTGATGCAAAATCCAGAGTTTCTACGTTTGTTTTCATCACCTGAGACATTGCAGGTGGTGGATATTTTGGACGATGTGACTGTCATTTCATTGCAAACAATTGTAACATTTCTTCGAAATCATTATGACCTTGTTCTATTGGCAGGACCATTTAACAACATGGGGTTGGAGATGTTATCCAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCTGTTCCAAACAGATCAAATGAGCCACCGGAGCAATTGTATGCCACCCAGCTTACACAGCTTCAAGAGATGGGGTTCTTTGACACACAAGAGAACATAAGGGCTCTCATTGCAACTTCAGGGAATGTTCATGCAGCAGTTGAACGTCTTTTGGGGAACTCTGTTTCAAGTCCTGTTAtggaaaacaataaaaatggttGCTCTAAATCTATGTTACAATCTAATGACCCTAAGAGTGATGGTGCCACAAATATGAGTCCTACTAGTGGAGAGGGTACAAGTACAAGGAATATCAAGATGTTGCCTGTGAGTTATTCAGTTTTGGATTCTGGTTGTTGGGGTCCCCTTAAGAGAGAAATTGgaactatcatcaacaatctgaAGATAAAATATTGTGAAGatgaagaagatgatgcaTCCAAATTGAAGGACGTTGTTGAATGTGTAAATATCAACGTTCGTTACTTCAACGGTTCAAGGTTTTCCGTTCAAGTTGCACTCGAATCCACGGTTGAATCCTTCAAGGTGCTTATAGTTGGAAACAGTGGCATTCCCATTCAAAATCAGAGACTCATTTACAAGGGCAAAATCTTGCAGAATGATCAATCCCTTCAAAGCTATGGTTTGGGAGCAAATCATACTGTCCATTTGGTTCGATGCTTTGCACCCACCGATACAGATGATGGGACCGACAATAGTGACACCGATACCATAACATATGATGATGCTGATAGTGAGGGGGACGATGACTTACTCCGAGAAGAAGATTTTCAACCAATGCAGCCACCATATGGTTTCGCTAATCCCAGTTCAGTCAGAGATTTTTTCGATACACTGACTATGCAGTACTTAATAGTTAATCCTGACATACTGTGGGATATTTTAATGAACAACGAAGAATTACCACCAAACGCGGTTATTGATCCCAGCATTGTGAGCCAGACTCTTGAAGCTGAAAGGAACCCTGCGATCATTCGCGAAATGATGAGACTATCAGACCTCGAACTGAACAACATTGAATCTTCTCCCGATGGATTCAACACGTTGAGGTACATTTATGAAGAAACTCATGAACCAAATGCCACTATAATGGCTGGTATTACAGGAATTTTTGGGACTTACGACGGCAATGCCCATCAATCAATTAATATTGAAACAAATGCCGATTCTTCCTTACCCAATACTACACCACTTCCCAATCCTTGGGCTTTTACAGAAATTATAGATGACCAGACTAATATCAGAAGATCAACCACTGATTATTCGGACCTCGAGGGCACGTTGGATGGCAATGTTATGCCAAATGTTGCTTTGCAGACACAATTAGTGCAAGATCCACCTACCCAACAATTCATAGAATTTATATCTTCCAACCCAGAAACATTGTGCCAGTTTGGTGATCATAATATTGAACAACATGGCATGCCAGATTTAAGTTCCCTCAGAGAAGAGATTCAAAATTCGGAGTTTCTTCGTTTGTCTCAATCTGAGACATTTCAGCAACCATTGTCTTTCTGGGAAGAAGATATTCTACCTGAGCTTAGTCAGCAACAATCAATGCAGGAACTGAGTCAGATAACTGGAGACACTGAGACAGCAGAGCAATTGTATGCCAGCCAACTTTCACAGCTTCAAGAGATGGGATTCAATGATACAGAAGAAAATATAAGAGCTCTTATTCTCACTTCTGGGGATATTCATGCAGCGGTTCGACATCTTTGGTGGCTCTTACATCAGTAG 3180 0.4208 MGGDGVVAAESNTELDTVNINVRCSNGSKYSVRVSLDSTVGSFKDLIAQNCDIPAQQQRLIYKGRILKDDQTLQSYGLEADHAVHLVRSFAPTNASGGTNSSGTNTTPNDAAGAGARANDAGGLGGLGFGGASLFPGLGNNGTGGNGLFGEGFPDLEQMQQPFISNPNLMREMMNSPAMQNLVSNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGISATRDQSTNPSTTSSETNAGSPIPNANPLPNPWSSTGTGVPQTNTRRSTTGGDARQQAPTGLGGLGLPGLEGMLGGSGMPDPALLTQLMQNPAISQMMQSMLSNPQTLSQILGAANTEQRGMPDLNSLRDVMQNPEFLRLFSSPETLQVVDILDDVTVISLQTIVTFLRNHYDLVLLAGPFNNMGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLTQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSVSSPVMENNKNGCSKSMLQSNDPKSDGATNMSPTSGEGTSTRNIKMLPVSYSVLDSGCWGPLKREIGTIINNLKIKYCEDEEDDASKLKDVVECVNINVRYFNGSRFSVQVALESTVESFKVLIVGNSGIPIQNQRLIYKGKILQNDQSLQSYGLGANHTVHLVRCFAPTDTDDGTDNSDTDTITYDDADSEGDDDLLREEDFQPMQPPYGFANPSSVRDFFDTLTMQYLIVNPDILWDILMNNEELPPNAVIDPSIVSQTLEAERNPAIIREMMRLSDLELNNIESSPDGFNTLRYIYEETHEPNATIMAGITGIFGTYDGNAHQSINIETNADSSLPNTTPLPNPWAFTEIIDDQTNIRRSTTDYSDLEGTLDGNVMPNVALQTQLVQDPPTQQFIEFISSNPETLCQFGDHNIEQHGMPDLSSLREEIQNSEFLRLSQSETFQQPLSFWEEDILPELSQQQSMQELSQITGDTETAEQLYASQLSQLQEMGFNDTEENIRALILTSGDIHAAVRHLWWLLHQ 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03596 1059 SMART CBM 142 183 IPR006636 -
Tsu04g03596 1059 SMART CBM 768 808 IPR006636 -
Tsu04g03596 1059 SMART CBM 337 390 IPR006636 -
Tsu04g03596 1059 SMART CBM 394 429 IPR006636 -
Tsu04g03596 1059 SMART CBM 196 235 IPR006636 -
Tsu04g03596 1059 MobiDBLite consensus disorder prediction 94 116 - -
Tsu04g03596 1059 MobiDBLite consensus disorder prediction 277 335 - -
Tsu04g03596 1059 CDD Ubl_Dsk2p_like 18 90 - -
Tsu04g03596 1059 CDD Ubl_Dsk2p_like 629 699 - -
Tsu04g03596 1059 MobiDBLite consensus disorder prediction 94 112 - -
Tsu04g03596 1059 Gene3D - 191 248 - -
Tsu04g03596 1059 ProSiteProfiles Ubiquitin domain profile. 18 87 IPR000626 GO:0005515
Tsu04g03596 1059 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 11 534 - -
Tsu04g03596 1059 MobiDBLite consensus disorder prediction 277 346 - -
Tsu04g03596 1059 PANTHER UBIQUILIN 11 534 - -
Tsu04g03596 1059 SUPERFAMILY UBA-like 490 532 IPR009060 GO:0005515
Tsu04g03596 1059 Gene3D - 7 103 - -
Tsu04g03596 1059 Gene3D - 616 711 - -
Tsu04g03596 1059 Pfam Ubiquitin family 631 698 IPR000626 GO:0005515
Tsu04g03596 1059 Pfam Ubiquitin family 20 89 IPR000626 GO:0005515
Tsu04g03596 1059 Gene3D - 476 538 - -
Tsu04g03596 1059 CDD UBA_PLICs 1017 1053 - -
Tsu04g03596 1059 CDD UBA_PLICs 494 532 - -
Tsu04g03596 1059 MobiDBLite consensus disorder prediction 704 728 - -
Tsu04g03596 1059 SMART ubq_7 629 700 IPR000626 GO:0005515
Tsu04g03596 1059 SMART ubq_7 18 89 IPR000626 GO:0005515
Tsu04g03596 1059 SUPERFAMILY Ubiquitin-like 628 716 IPR029071 -
Tsu04g03596 1059 MobiDBLite consensus disorder prediction 709 728 - -
Tsu04g03596 1059 Pfam UBA/TS-N domain 1017 1050 IPR015940 -
Tsu04g03596 1059 Pfam UBA/TS-N domain 494 530 IPR015940 -
Tsu04g03596 1059 SUPERFAMILY Ubiquitin-like 13 105 IPR029071 -
Tsu04g03596 1059 Gene3D - 1008 1054 - -
Tsu04g03596 1059 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 488 533 IPR015940 -
Tsu04g03596 1059 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 622 1010 - -
Tsu04g03596 1059 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 1013 1053 - -
Tsu04g03596 1059 PANTHER UBIQUILIN 622 1010 - -
Tsu04g03596 1059 PANTHER UBIQUILIN 1013 1053 - -
Tsu04g03596 1059 SUPERFAMILY UBA-like 1012 1054 IPR009060 GO:0005515
Tsu04g03596 1059 MobiDBLite consensus disorder prediction 543 576 - -
Tsu04g03596 1059 ProSiteProfiles Ubiquitin domain profile. 629 698 IPR000626 GO:0005515
Tsu04g03596 1059 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1011 1053 IPR015940 -
Tsu04g03596 1059 SMART uba_6 1017 1058 IPR015940 -
Tsu04g03596 1059 SMART uba_6 494 532 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03596 Tsu-Chr4 45007625 45021084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03596 18 87 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.857 4.17e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03596 K04523 - gmx:100776447 749.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00931 05 8087084 8093405 Tsu04g03596 04 45007625 45021084 PCT