Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03595 ATGGTTATTTCTTCTGAAGAGAATAATTCCATTGCAATGATGCCCAAAAAATTTCAAGGAGGGATGGATCAAAAGGGTGGAAGATTTGCTGGGAAGAATAACAGAAGAAGTTTGAGTGTGATCAATCAGAATTTAGTGCAAGGACAATCTTACCCTTGTGTTGTTAACAAGAGAGTGTTGATGTCTGATAAACATGAGATTTGTGAAAAGAAACAGGCTGATATGGGACATCGACCAATCACAAGGAGGTTTGCTGCAAAAATTGCTGGTTCACAGCAATCTTATGTTGAgAAACCTAAGAATTCAAATCCATTGAATTCGAATGAGTTCGGAAATGCCATTGCTATTGATGATGAGCACAAGTCACCAGCAAACCAACCATTGCCTATGATTTTAGAATCAACAGACCCAATGAATACTGATCAACATGAGATGGAGGAAGTTGAGATGGAGGATATTGATGGGGAGATGATTTTGGACATTGATAGCTGTGATGCAAATAATTCTCTTGCTGTTGTGGAATATATTGAAGATCTTCATTCTTACTACAAACAAATCGAGTGTATTGGCTGTGTTTCACCACACTATATGGCAAAACAAGTTGACCTTAATGAGAGGATGAGGGCTATACTAGTTGACTGGTTAATTGAGGTGCATGACAAATTTGACCTCATGCATGAGACATTGTTTCTTACAATTAATCTCATAGACAGATTCTTGGCTAAGCAAAATGTTATAAGAAAGAAACTTCAGCTGGTTGGTCTTGTTGCCATGCTTTTGGCATCCAAGTATGAGGAAATTTCCGTTCCTGCTATTTCAGATCTAATCCATATATCCGATAAAGCTTACACAAGGAAGGATGTTCTCGATATGGAGAAATTGATGCTGAACACATTGCAGTTTAACATGTCTCTGCCAACTGCATATGTTTTTATGAGAAGATTTCTGAAGGCTGCTCAAGCCGACAAAAAACTCGAGCGAGTAGCTTTTTTCTTGGTAGAGTTATCTCTGGTGGAATATGAGATGCTGAAGTTTCCACCATCCTTGGTGGCTGCAGCTGCTGTCTACACTGCTCAATGCACTGTCAGTGGTTTCAAACATTGGAACAAGACTTGTGAATGGCACACAAACTACTTTGAAGATCAGCTACTGGAGTGCTCTATGAAGATGGTTGGATTCCACCAAAAAGCCGGAACCGGGAAACTAACAGGAGTATATAGGAAGTATGGCTCAGCAAAATATAGCTTCACAGCTAAATGCGATCCGGCATGTTTTCTTCTGGAGAACAACAACCAGTCATAG 1302 0.3948 MVISSEENNSIAMMPKKFQGGMDQKGGRFAGKNNRRSLSVINQNLVQGQSYPCVVNKRVLMSDKHEICEKKQADMGHRPITRRFAAKIAGSQQSYVEKPKNSNPLNSNEFGNAIAIDDEHKSPANQPLPMILESTDPMNTDQHEMEEVEMEDIDGEMILDIDSCDANNSLAVVEYIEDLHSYYKQIECIGCVSPHYMAKQVDLNERMRAILVDWLIEVHDKFDLMHETLFLTINLIDRFLAKQNVIRKKLQLVGLVAMLLASKYEEISVPAISDLIHISDKAYTRKDVLDMEKLMLNTLQFNMSLPTAYVFMRRFLKAAQADKKLERVAFFLVELSLVEYEMLKFPPSLVAAAAVYTAQCTVSGFKHWNKTCEWHTNYFEDQLLECSMKMVGFHQKAGTGKLTGVYRKYGSAKYSFTAKCDPACFLLENNNQS 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03595 433 ProSitePatterns Cyclins signature. 208 239 IPR006671 -
Tsu04g03595 433 PANTHER CYCLIN-B2-1 24 427 - -
Tsu04g03595 433 SUPERFAMILY Cyclin-like 306 420 IPR036915 -
Tsu04g03595 433 SUPERFAMILY Cyclin-like 167 303 IPR036915 -
Tsu04g03595 433 CDD CYCLIN 207 296 IPR013763 -
Tsu04g03595 433 PIRSF Cyclin_A_B_D_E 4 433 IPR039361 -
Tsu04g03595 433 Gene3D - 178 416 - -
Tsu04g03595 433 CDD CYCLIN 304 391 IPR013763 -
Tsu04g03595 433 SMART cyclin_7 213 297 IPR013763 -
Tsu04g03595 433 SMART cyclin_7 310 392 IPR013763 -
Tsu04g03595 433 Pfam Cyclin, C-terminal domain 306 421 IPR004367 -
Tsu04g03595 433 PANTHER CYCLINS 24 427 IPR039361 -
Tsu04g03595 433 SMART Cyclin_C_2 306 423 IPR004367 -
Tsu04g03595 433 MobiDBLite consensus disorder prediction 1 32 - -
Tsu04g03595 433 Gene3D - 192 304 - -
Tsu04g03595 433 Pfam Cyclin, N-terminal domain 179 304 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03595 Tsu-Chr4 44995016 44998539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03595 1 427 Core Cell Cycle Gene Families AT1G20610 54.545 3.42e-164 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03595 K21777 - gmx:100798068 606.29