Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03571 ATGACATCATTTGATGCCAATAAATGTTCTATTATTGTAAATAATCATTATCCTTCggtatttttctttcttctctatttTGTGACCATGCTTGACATGTTTGTAGCTCATGAGATTAAGGTTGCCCCAACATTATACATATTTGGAGATTCAACATTTGATGTTGGAACAAACAATTTCCTCAACTCTAAAACAAAGGCAGACAGCCCCTATTATGGGATTGATTTCCATAATTCATTTCCCACTGGAAGGTTTAGCAATGGTCTCAACATTGCTGACCAAATTGCTAGACAATTTGGTTATAAGAAAAGTCCACCTTCATTTTTGGATTTGGAGACACTTGAATACAGTTTCAAGCTGAACATTATGCTTGGTGTCAATTTTGCATCTGGGGGATCTGGAATTCTTAGATATACTGGATACAAACAATGGGGAGAAGTGATTTTCCTTGAAAAGCAGGTGGACCAATTCGCATTAGTCCGCGAAAATATCACTAACACATTGGGGCCAGAAAAAGCTGCTAGTTTTGTTTCAAAGGCTTTGTTTCTCATTAGCATTGGCAGCAACGACCTCTATGATTATGAACATAGTGAAAGTGGTGTCTATCATTTGGGCAAGGAAGAAAATTTGGCTGTTTTACAGCTAAACTATTACACTTATATAAGGAAACTATATGAATTAGGGGCTAGGAAATTTGGCATCTTAAGCATTCCACCCATAGGGTGTTATCCTGCTGTAACTTCTACCAATGAAGGGAATTGTGTGAAACCACTTAATGATTTCTCTGTTGCATTTTACAAAGCAACGCAAACTCTTCTGCAAAAATTAAGCTTGGAGTTGGAAGGATTTGAGTATTCTCTTGGCAACACTTATGCAATGTTCACAACCATGCTAAAAGATCCATTAGTCTTTGGGTTGAATGATACCAAGTCAGCATGTTGTGGAATTGGAAAGTTGAATGGAGAAGGAAGTGGTAGAGACTTAACAAGTATCCAATGGGATTCACATCTTAAACCTACTTTTGATGTAGAAGCAAATAACACAGTTGCAAGAGACATTACATTTATGAATACACGCAACAGTCCTGTAATATTAGAAGATCAGGTGCCGGCAATCACACAAGCTGTTGCAGCTATGATCTACGCGGATAAATGTGCTTTCTATGATTGTGCTTTTTATGGGGTACAAGACACTCTGTATGATACTTATGGGCGACATTACTATCACAATTGCTATATTCAAGGTGGAATTGATTTTGTATTTGGAAATGGTCAATCAATCTTTGAGGCAAGTACATTAAACTTTTCAATGGGGGTATATGGTCCGAAACTAGGTGGGGTTTTTACAGCACAAAGAAGAGCATCAGCAAATGATAGTAGTGGATTTGTGTTTAAAAATTGTACATTCACAGGGACAAAAGAAACTGCTATACTTGGAAGATCATTGGATGCTTATTCAAGAGTTATTGTAGCCAATTCATACCTAACAAATGTGGTTTCACCTGAGGGTTGGTATGCTAGGACCTATGTTGGCCATGAAGAAACGATCACATTTGTGGAGGCGGGAAATAGTGGACCAGGAGCAAATCAATCGCAACGAGTGAAATGGATGAAGCACTTGAGTGGAGCTGAGCTTGATCGATTCTTGAATATCTCTTTTATTGATAAGGAAGGGTGGATTAACAAATTGCCCGTGAATAATTGA 1704 0.3738 MTSFDANKCSIIVNNHYPSVFFFLLYFVTMLDMFVAHEIKVAPTLYIFGDSTFDVGTNNFLNSKTKADSPYYGIDFHNSFPTGRFSNGLNIADQIARQFGYKKSPPSFLDLETLEYSFKLNIMLGVNFASGGSGILRYTGYKQWGEVIFLEKQVDQFALVRENITNTLGPEKAASFVSKALFLISIGSNDLYDYEHSESGVYHLGKEENLAVLQLNYYTYIRKLYELGARKFGILSIPPIGCYPAVTSTNEGNCVKPLNDFSVAFYKATQTLLQKLSLELEGFEYSLGNTYAMFTTMLKDPLVFGLNDTKSACCGIGKLNGEGSGRDLTSIQWDSHLKPTFDVEANNTVARDITFMNTRNSPVILEDQVPAITQAVAAMIYADKCAFYDCAFYGVQDTLYDTYGRHYYHNCYIQGGIDFVFGNGQSIFEASTLNFSMGVYGPKLGGVFTAQRRASANDSSGFVFKNCTFTGTKETAILGRSLDAYSRVIVANSYLTNVVSPEGWYARTYVGHEETITFVEAGNSGPGANQSQRVKWMKHLSGAELDRFLNISFIDKEGWINKLPVNN 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03571 567 SUPERFAMILY SGNH hydrolase 43 244 - -
Tsu04g03571 567 Pfam GDSL-like Lipase/Acylhydrolase 45 319 IPR001087 GO:0016788
Tsu04g03571 567 Gene3D - 315 567 IPR012334 -
Tsu04g03571 567 Pfam Pectinesterase 329 555 IPR000070 GO:0030599|GO:0042545
Tsu04g03571 567 SUPERFAMILY Pectin lyase-like 322 564 IPR011050 -
Tsu04g03571 567 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 26 324 - -
Tsu04g03571 567 PANTHER OS01G0509800 PROTEIN 26 324 - -
Tsu04g03571 567 CDD SGNH_plant_lipase_like 43 353 IPR035669 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03571 Tsu-Chr4 44816677 44823948 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03571 322 560 Carbohydrate Esterase AT1G05310 37.600 1.27e-46 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03571 - - cam:101512680 518.85