Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03565 ATGGGTGTATCCAAAAAATGGTTAAGAATTGTTAGAACAAAATTCCTAAGATCTTCCAACAAAGACTTAACTCTCCCTCCTCGTACAATTGTTTGCACAAATCAAACCCAACAAGCCATACATGGAAATGAAACAACTACTATCAAGGAAGATTTTATCATTTTGCCATCACCAACTATTAATTCTTCATCAACCACATTATTCACTAAGGAAGACTTTGCAGCAATTAAGATTCAAGCTTATTTCAGGGGTCATCTTGCAAGAAGAGCGCATAGAGCATTGAAAAGCCTAGTGAAATTGCAAGCATTGGTTCGAGGGGTGTGTGTGAGGAGACAATCGCGTATTGCAATGCAATGTATGCACGCGCTTGTTCGATTACAAGTCAAGGTTCGTGCAAGACAATTACTTGGTACCTTTGATCACACTCAATAA 432 0.3843 MGVSKKWLRIVRTKFLRSSNKDLTLPPRTIVCTNQTQQAIHGNETTTIKEDFIILPSPTINSSSTTLFTKEDFAAIKIQAYFRGHLARRAHRALKSLVKLQALVRGVCVRRQSRIAMQCMHALVRLQVKVRARQLLGTFDHTQ 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03565 143 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 115 IPR027417 -
Tsu04g03565 143 ProSiteProfiles IQ motif profile. 71 99 IPR000048 GO:0005515
Tsu04g03565 143 PANTHER IQ-DOMAIN 5-RELATED 4 137 - -
Tsu04g03565 143 SMART iq_5 70 92 IPR000048 GO:0005515
Tsu04g03565 143 SMART iq_5 93 114 IPR000048 GO:0005515
Tsu04g03565 143 Pfam IQ calmodulin-binding motif 74 92 IPR000048 GO:0005515
Tsu04g03565 143 PANTHER OS04G0561100 PROTEIN 4 137 - -
Tsu04g03565 143 Gene3D - 69 122 - -
Tsu04g03565 143 ProSiteProfiles IQ motif profile. 95 122 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03565 Tsu-Chr4 44786456 44787248 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03565 59 137 IQD Protein Family AT3G51380 72.152 2.50e-33 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03565 - - cam:101507643 196.823