Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03564 ATGAATTTTAATTCTTCTAAGTACATTTTCCCTTTTCCAGAATCACTTTTACCAGACAATCAATCACCTGATTGGAACAACAAAGCTGACAATGCATGGCAACTAACAGCAGCAACATTAGTGGGCCTACAAACTGTTCCTGGGCTTGTAATACTTTATGGCAGCATGGTTAAGAAAAAATGGGCCGTAAATTCAGCTTTTATGGGCCTATATGCATTTTCAGCTGTGTTAGTTTGTTGGGTTTTATGGGCCCATCAAATGGCATTTGGAAACAAGCTTTTACCTTTTGTTGGAAAGCCCAATTTTGCTTTGACACAAAAGTTTCTACTTTCAAAGGCATCAACACAATATAATTTACCAATGGCTGATTTTGTTTACTATCAATTTGCTTTTGCTGCAATTACTCTTGTGTTGCTTGCAGGATCTTTGCTTGGGAGAATGAATTTTTTTGCATGGATGTTATTTGTTCCTATGTGGCTTACATTTTCTTATACCATTGGTGCTTTTACTATATGGGGGAATGGATTTCTTGAAGGGAAAATAATTGATTATGCTGGTGGATTTGTAATTCATTTATCCTCTGGTGTTGCTGGTTTTACAGCTGCTTATTGGGTTGGTCCAAGAACTTCAGATGATAGGAAAAATTTCCCACCAAATAACATAATTCACATGCTTGGAGGTGCAGGGTTCTTATGGATGGGATGGACAGGGTTTAATGGTGGAGCACCATTTCAAGTAGGAGAGGTAACATCCTTAGCAATCTTCAATACTCATTTGTGCACTGCCACAAGCATTCTTGTTTGGATTTCTCTAGATATGATTGTATACAAGAAGGGCTCATTGATAGGTTCTGTCCAAGGAATGATCACTGGCCTTGTTTGCGTCACACCTGGTGCAGGATTGGTGGATCCATGGGCAGCAATATTGATGGGAGCTTTGTCTGGTTCAATTCCATGGTACACAATGATGGTGTTGCACAAAAAACTaccattttttcaaaatgtagaTGATACATTAGGAGTTTTTCACACTCATGCTGTAGCTGGAATTCTTGGGGGAATCCTTTCTGGTGTCTTTGCCAAGCCCAAACTTTTAAGGATGCTTTATGGGCCTAAAACTTCTTATGGGCCTGGCTTATTTTATAGTTATTTTGATGAGAATATAGACCTAGGAATTAGGCAAATATTGTACCAATTACTAGGAGcaatttttattactatttggAATGTTGTTATTACTAGTCTCATTTGTATTATTCTAAGTCACATTGTGGACCTTCGAATGCAAGAAGAAGACCTTGAAGTTGGTGATGATGCTATTCATGGAGAAGAAGCTTATGTATTATGGGGTGATGGAGAAAGTATGATACTCCCACTTCGTCTACATAAAAGTACTTCAACAAATGTTTCCATTTCTCACCAAAGACATTCAATTCCTATCAATAAAATTGATGAATAA 1458 0.369 MNFNSSKYIFPFPESLLPDNQSPDWNNKADNAWQLTAATLVGLQTVPGLVILYGSMVKKKWAVNSAFMGLYAFSAVLVCWVLWAHQMAFGNKLLPFVGKPNFALTQKFLLSKASTQYNLPMADFVYYQFAFAAITLVLLAGSLLGRMNFFAWMLFVPMWLTFSYTIGAFTIWGNGFLEGKIIDYAGGFVIHLSSGVAGFTAAYWVGPRTSDDRKNFPPNNIIHMLGGAGFLWMGWTGFNGGAPFQVGEVTSLAIFNTHLCTATSILVWISLDMIVYKKGSLIGSVQGMITGLVCVTPGAGLVDPWAAILMGALSGSIPWYTMMVLHKKLPFFQNVDDTLGVFHTHAVAGILGGILSGVFAKPKLLRMLYGPKTSYGPGLFYSYFDENIDLGIRQILYQLLGAIFITIWNVVITSLICIILSHIVDLRMQEEDLEVGDDAIHGEEAYVLWGDGESMILPLRLHKSTSTNVSISHQRHSIPINKIDE 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03564 485 ProSitePatterns Ammonium transporters signature. 183 208 IPR018047 GO:0008519|GO:0016020|GO:0072488
Tsu04g03564 485 PANTHER AMMONIUM TRANSPORTER MEP2 9 468 IPR001905 GO:0008519|GO:0016020|GO:0072488
Tsu04g03564 485 Gene3D Ammonium transporter AmtB like domains 15 449 IPR029020 -
Tsu04g03564 485 Pfam Ammonium Transporter Family 32 446 IPR024041 GO:0008519|GO:0016020|GO:0072488
Tsu04g03564 485 SUPERFAMILY Ammonium transporter 25 427 - -
Tsu04g03564 485 TIGRFAM amt: ammonium transporter 30 446 IPR001905 GO:0008519|GO:0016020|GO:0072488
Tsu04g03564 485 PRINTS Rhesus blood group protein signature 253 275 IPR002229 GO:0005887
Tsu04g03564 485 PRINTS Rhesus blood group protein signature 128 144 IPR002229 GO:0005887
Tsu04g03564 485 PRINTS Rhesus blood group protein signature 346 362 IPR002229 GO:0005887
Tsu04g03564 485 PRINTS Rhesus blood group protein signature 222 240 IPR002229 GO:0005887
Tsu04g03564 485 PANTHER AMMONIUM TRANSPORTER 9 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03564 Tsu-Chr4 44775721 44778065 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03564 121 454 Inorganic Solute Cotransporters AT2G38290 58.209 1.38e-133 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03564 K03320 - gmx:100815876 778.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g03192 02 35615451 35620059 Tsu04g03564 04 44775721 44778065 PCT