Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03561 ATGGTTGGTCTTTTTTCCTTCAGATCAAGGTCTCGAAGTCCTGAAAGGGTTGCCAATGCTACCAATCCTGGTAATACACTTTATGTTACTGGTCTATCTTCAAGGGTCACTGAGAGGGACCTAGAGGATCATTTTAATAAAGAGGGAAAAGTTGCTTCATGTTTTCTTGTGGTGGAACCTCGTACCCGAATTTCACGTGGTTTTGCTTTTGTTACAATGGATTCCCACGATGATGCTGAACGCTGTATCAAGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACTGTGGAACGGTCAAGAAGAAAGCGTGCAAGAACTCCAACACCGGGACACTATCTTGGGCTGAAAAATACTAGAGACTATGGCCCTCGTGGTGACCATCGCGGTGACCGCGGTGATCGTGGTGACTTTCGTGGGGACCATCGCAGTGACTTTCGTGGTGACCACCGCGGTGACCATCGTGGTGATTTCCGTGGTGACCATCGCGGTGACCGGGGAAGGTATCGTGGTGGTTCTGGTCGCGGCGATTATTCATATCGTAGATCTCCAAGGCGTTCACCATACCGTGGAGGCCACGATCATTCACCACAGCACTCACCCTATGTTGGGAGGTCTAGGAGGGAGAGATCTAGGTCCATTCCTCAGTCTCCTTATAGCCCAGAAAGGAGGTATGCTGGTGGATCTAGGTGA 696 0.4928 MVGLFSFRSRSRSPERVANATNPGNTLYVTGLSSRVTERDLEDHFNKEGKVASCFLVVEPRTRISRGFAFVTMDSHDDAERCIKYLNQSVLEGRYITVERSRRKRARTPTPGHYLGLKNTRDYGPRGDHRGDRGDRGDFRGDHRSDFRGDHRGDHRGDFRGDHRGDRGRYRGGSGRGDYSYRRSPRRSPYRGGHDHSPQHSPYVGRSRRERSRSIPQSPYSPERRYAGGSR 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03561 231 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 7 227 - -
Tsu04g03561 231 SMART rrm1_1 26 99 IPR000504 GO:0003723
Tsu04g03561 231 MobiDBLite consensus disorder prediction 101 231 - -
Tsu04g03561 231 PANTHER RNA RECOGNITION MOTIF 7 227 - -
Tsu04g03561 231 MobiDBLite consensus disorder prediction 122 173 - -
Tsu04g03561 231 MobiDBLite consensus disorder prediction 180 194 - -
Tsu04g03561 231 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 96 IPR000504 GO:0003723
Tsu04g03561 231 Gene3D - 6 109 IPR012677 -
Tsu04g03561 231 SUPERFAMILY RNA-binding domain, RBD 11 115 IPR035979 GO:0003676
Tsu04g03561 231 CDD RRM_RBMX_like 24 103 - -
Tsu04g03561 231 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03561 Tsu-Chr4 44766190 44769307 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03561 22 87 Eukaryotic Initiation Factors Gene Family AT3G11400 39.394 1.41e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03561 K12897 - zju:107408932 198.749