Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03559 ATGGAGTTTATGGCAAATCAATGCCCTTTATTGGATTTCTTTGTTAATTTGGTTAAGAGGGTCAGATGGGTTGGTGGCCTCATCATCTCAGTCATCATTGGAAACATTTTCTGTGCGATCTTGACATTCTGCTTTGCATTTGTGGGAACTTTGTTAGGGGCTATGACTGGAGCATTGATAGGCCAAGAAACAGAGAGTGGCTTCATAAGAGGTGCTGCTGTTGGTGCTGTGTCAGGTGCTGTTTTCTCTATTGAAGTCTTTGAATGTTCTCTTAATCTTTGGCATTCTGATCAATCTGGATTTGGTTGTCTCTTGTACTTGATTGATGTTATTACTAGCCTATTGAGTGGAACACTTGTACGTGAAAGGATAGGTCCAGCCATGTTGAGTGCTGTCCAAAGTCAGATGGGTGCTGATGAAATGAGATTTTATGagtttcaaaatatatttgacattGGAGGTGACAGAGGTTTATCAGGAGCTTCAGTTGAAAAGATCCCAACAATCTCAATCACAAGTGACAACAATTTTGATGCTTCTGGTGACAGAGTTTCATGTTCAGTGTGCCTTCAGGATTTCCAAATTGGAGAGACAGTTAGAAGCTTGCCTCATTGTCATCATATGTTTCACCTACCTTGCATTGACAAGTGGCTCATCAAACATGGTTCCTGCCCATTATGTAGAAGAGATctacaataa 699 0.3963 MEFMANQCPLLDFFVNLVKRVRWVGGLIISVIIGNIFCAILTFCFAFVGTLLGAMTGALIGQETESGFIRGAAVGAVSGAVFSIEVFECSLNLWHSDQSGFGCLLYLIDVITSLLSGTLVRERIGPAMLSAVQSQMGADEMRFYEFQNIFDIGGDRGLSGASVEKIPTISITSDNNFDASGDRVSCSVCLQDFQIGETVRSLPHCHHMFHLPCIDKWLIKHGSCPLCRRDLQ 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03559 232 CDD RING-H2_PA-TM-RING 186 228 - -
Tsu04g03559 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 232 IPR013083 -
Tsu04g03559 232 ProSiteProfiles Zinc finger RING-type profile. 186 228 IPR001841 -
Tsu04g03559 232 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 14 231 IPR044523 -
Tsu04g03559 232 Pfam Ring finger domain 185 228 IPR001841 -
Tsu04g03559 232 SMART ring_2 186 227 IPR001841 -
Tsu04g03559 232 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 14 231 - -
Tsu04g03559 232 SUPERFAMILY RING/U-box 185 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03559 Tsu-Chr4 44730912 44732620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03559 15 231 C3H Transcription Factor Family AT5G66070 68.664 9.90e-106 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03559 - - gmx:100306109 368.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00888 05 7675158 7676633 Tsu04g03559 04 44730912 44732620 PCT