Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03557 ATGGTTGATGATAAGAATGCATCTACACATTATAATATGTTGTTGGGATTCATTGCAGGCATTACAACAGTTATGGCATTGACCTTATTGTTTTGCCTCTTTTGGAAAAGGATCATTCCATTTCTTAAACAACCTAAGACTTTAAAAGGAaagcaatttaaaaccttgaaatatgacaaaatatcttTAAGGTGTTTTAATCTTGAGGAACTAGAGAAAGCTACACAAAATTTTAGCCAAGATTGCTTATTGGGTTCTGGTGCATTTGGTAATGTCTACAAGGGAACTTTTGAGTTAGAAGGAATACTAGCTATAAAGAGATCTCATTCTGAATCATTCTTAAGTATGGAGGAATTCAGAAATGAAGTTAGGCTTCTTTCAGCAGTAAAACACAAGAATCTTATTGGTCTGGTTGGATATTGTGAAGAACCAGAACGAGATGGAGCAAAAATACTAGTGTATGAATATGTACCAAATGGTTCTCTCTTGGAGTACATGATGGGTAAAAGGAGAAGCTTAACTTGGAAGCAAAGAATAAACATAGCAATAGGAGCAGCAAAAgGCATAGCTTATTTGCATGAAGAGGTAAAGCCAAGCATAATTCATCGTGACATCAAACCAAGTAACATACTATTAGGGGAAGATTTTGAGGCTAAGGTTTCAGATTTTGGGTTGGTAAAATCAGGGCCTACTGGTGATCAATCACATGTTAGTAGCCAAATCAAAGGGACACCAGGTTACCTTGACCCTGCCTATTGTTCAAGCTGCCATTTGACCAAATTTAGTGATGTGTATAGCTTTGGTGTCATACTTTTGCAACTTATTTCAGCTAGACCTGCTGTTGATAATGCTGAAAATCCAAGCAACCAACATATTATTGATTGGGCAAGGCCTAGCATAGAGAAGGGTAACATTGAAGAAATCATGGATGcaaatttattttgtgaaaGTGAGCCATGTGATATGAAAGTTATGCTACAAATGGGACAACTTGGTATAAGATGTGTGGCTCAAGAACCAAAACATCGTCCCACAATGACCCAAGTTTGTAAAGAACTAGAGCAAGCCCTCTACTCAGATGATAGATTCACTAACAAGGATTCAGAAACTCATGGATCAATGGAACACTATGATTTTTCACAGAGCTATGTGAGCATAGATGGTGTTGGATTAGAGAAATTCCATGTTGATTTGGATAGCTTCTCCTTTAAGAGCACAAACTTAAGGTGCCtagaaaataatagtattagtattGACATTGACAAGAACAATTTGAGGAGAATATAA 1287 0.352 MVDDKNASTHYNMLLGFIAGITTVMALTLLFCLFWKRIIPFLKQPKTLKGKQFKTLKYDKISLRCFNLEELEKATQNFSQDCLLGSGAFGNVYKGTFELEGILAIKRSHSESFLSMEEFRNEVRLLSAVKHKNLIGLVGYCEEPERDGAKILVYEYVPNGSLLEYMMGKRRSLTWKQRINIAIGAAKGIAYLHEEVKPSIIHRDIKPSNILLGEDFEAKVSDFGLVKSGPTGDQSHVSSQIKGTPGYLDPAYCSSCHLTKFSDVYSFGVILLQLISARPAVDNAENPSNQHIIDWARPSIEKGNIEEIMDANLFCESEPCDMKVMLQMGQLGIRCVAQEPKHRPTMTQVCKELEQALYSDDRFTNKDSETHGSMEHYDFSQSYVSIDGVGLEKFHVDLDSFSFKSTNLRCLENNSISIDIDKNNLRRI 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03557 428 Pfam Protein kinase domain 81 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03557 428 Gene3D Transferase(Phosphotransferase) domain 1 157 379 - -
Tsu04g03557 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Tsu04g03557 428 CDD STKc_IRAK 84 355 - -
Tsu04g03557 428 ProSitePatterns Protein kinases ATP-binding region signature. 84 106 IPR017441 GO:0005524
Tsu04g03557 428 ProSiteProfiles Protein kinase domain profile. 78 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03557 428 Gene3D Phosphorylase Kinase; domain 1 42 156 - -
Tsu04g03557 428 PANTHER OS01G0750732 PROTEIN 13 394 - -
Tsu04g03557 428 SMART serkin_6 78 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03557 428 SUPERFAMILY Protein kinase-like (PK-like) 59 354 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03557 Tsu-Chr4 44720239 44723403 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03557 13 356 Receptor kinase-like Gene Family AT5G48740 39.655 2.35e-74 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Tsu04g03557 Pkinase 1.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03557 - - gmx:106794267 650.588