Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03533 ATGACTTCTCAAAATCCTAACCACAAAAATTCCCTTTACCCAGAAGTTATAGATTCAAATCCGGAGGCATCCTCACCCTTCATCTCTAACCCTAATCCAACCTCTTCCTCTCTATACCCTACCATCGACGTCTCCGACCTCGTCGAAGATCTCTTCCCGGAAAACACCACTCCTTCCGCTCCTCCGATCGAAGCCGAATATTTCTTCCCGGAAAATACCAGTCCTTCTGCTCCTCCGATCGATGCCGAAGATTTCTTCCCGGAAAACACCAGTCCTTCCGATCCTCCAATCGCAGCCGAAGATATCCTCATCAAGGTCCCTGGCGCCATTCTCCACCTTATTGATCAACAATACAGCGTCGAGCTCGCGATCGGCGAACTCACCATTATTCGTCTCCGGCAGGGACACAATACTCTTGCCATTTACGCTCGTGTCGCTGATGAGATCCAATGGCCACTTGCCAAGGATGAGGCTGCTGTCAAGGTCGACGACTCACATTACTTCTTCTGTTTTTGTGTGCCGAAGGAAAAATGTGATTCCGATTCGAGTGATTCAAGCGAcgaggaaaaagaaaaggacaAGGATAAGAAAAAGAATCTACGGAGTAAAAGTCGCCGGAAAGGAGACGATGGTTTGGAATTGCTTAGCTATGGATTGACGATTGCATCGAAAGGACAAGAGGATTTGGTGAAGGAGCTTGATGAGGTTTTGAAGGAATGTAGCAATTTTTCTGTTCAGCAGGTTTCGGAAAAGGCGAAGAAGAAAGGAGAGGCTTTAGATGCTTCTTTGGCGATGGAGATATCACCGGAGGATTTGGATACGGTGAAGGAGAAGAAGGAATTGATGGAGGAAAGGTGTGCTGCTTATTGGACTACATTGGCTCCTAATGTGGAGGATTACAGTGGAACAGCTGCGAAGCTTATTGCGGCCGGTTCTGGACAATTGGTTAAGGGAATTTTGTGGTGTGGTGATGTTACTGTTGATAGGTTGAAATGGGGAAATGAGTTCATGAAGAAGAGGATGGGTCCTCCTTCACAGGCTGAGATTAGTCCCCAAACCCTAAGAAGAATCAAAAGGGCAAAGAAAGTGACTAAAATGACAGAGAGTGTTGCCACGGGGGTCCTCACCGGAGTTGTGAAAGTGTCTGGGTTTTTCACCAGTTCAGTGGCAAATTCCAAAGCAGGAAAGAAATTTTTCAAGCTTCTACCTGGCGAAGTTGTGCTTGCATCATTGGATGGATTCAGCAAGCTGTGTGATGCTGTCGAAGTAGCAGGAAAAAATGTTATGTCAACATCAAACACCGTGACAACCGAGATTGTCCATCACAGATATGGAGAAGAAGCTGCCAAGGCAACTAGTGAAGGACTAGATGCTGCTGGTCATGCGGTGGGGACTGCATGGGCTGCTTTTAAGATTCGACAGGCTTTAAATCCTAAAAGTGTTCTAAAATCTGCCTCCATGGCCAAATCTGCAGCTAAAGCTGCTGCAGATGAATATAAGGCTAAAAAATCAAAAGTAAGTTACAAGTGGCAGAAGACAAAAGACAAAAGCTCTTCTGTATGTTTGCCAGGTTCAAGTTCTCCTATTATGGCTACTAAGTGCATGCATGTTTTTGATAGATTGATGTTTTCTGTAACTTGTTGGAAGAAAAGTAGGACACAAACTGGCAGAAGAAAGTTCCATAGGGAtgtagaaaaagaagaattcCAGTATGCAAGTACTCAATGTCTATCATCCTATTACAGTGTCTTTGTCGTTCGCCTTGCAATCATGGTTATGCTAGCTATCTTGATTGGTCTACTCACTATCCTAACATGGCATTTCACAAAGATTTATACAACAAAATCCCTAAATAGTTTGGCTTATGACCTGCGTTACGAGCTTCTGCAACGTCCCATCTTAAGGATGTGGAACATTTTGAACTCTACTGCGGAAATCACAACTGCTCAAGTTAAGTTGTCTGAGTATGTTATCAGAAGCCACAACAACCTAGCCACTCAAGAAGATCATGTTGAGATGTATGAAGCCATGAGAGCTGTGACATGGGCACTGTTTTCTAGTCGAAAAGCTCTCAACTCGATAACTGTCAAATATGGAAACGGTTTTGTTCAGGCATTTCATAGAGACTTGAAGGATAATAATACTTTTTACATTTACACTGATCTTGCATATAACGAGACCAGTGAAGCTTTGAATGATAAAGACATTCATAACAAGACTGCGATTTGGTACCGAGAACAGCTTGATCCATTTAGTGGCGAGAAGATTGGAAAAGCAATGAAAATTGCACCAGAAGACTCAATCAGTATAGCTGGCATGTCACAAGTACCTGATGGTGTAGCTTCGTGGCACGTTTCTGTGAGCAAGTTTACGGATTCACCGCTACTTTCAGCAGCATTGCCAGTTTGGGATTCTTCTAATAAGAGTATTGTAGCAGTTGTCGGTGTCACAACAGCGCTTTATAGTGTAGAGCAGTTAATGAAGGAACTAGTCGACAAGCACAGTGGTCATATGTATTTGACCTCTCAAAAGGGCTATTTGCTTGCAACTTCCACAAATGACCCTCTACTGACAAATTCAACAAAGAAACCTAAGCTTAAAATGGCTGTTGATTGTGATAATGAAGTAATAAGAGAGGGAGCAAGGTGGCTACAGAAAACCTATGGGAACAATTTCCCTCCAAGTCATGAGGTTCATGTAGAGAATGCCAGGCTAGGTCACCAGCAATATTACATTGACTCGTTCTTCCTAAACTTGAAAAAGCTTCCTCTGGTGGGTGTAATAATCTTACCAAGGAAGCATATCATGGGGCAGGCAGATCAAAGAGCCTACAAAACATTGGTTATTCTGATATCTGCATCATTGTGTATTATTGTCATTGGATGTGTTTGCATTTTGATATTGACAAATGGAGTATCAAAGGAAATGAATCTAAGAGCAGAATTAATCAGTCACCTGGAAGCAAGAAGGAAAGCGGAGGCATCAAGCAACTATAAAAGCCAATTTCTTGCAAATATGAGTCATGAATTACGGACACCGATGGCAGCAGTAATCGGATTACTTGATATTCTTTTGTCTGATGATTGTCTCACAAATGAACAATATGCAACCGTTactcaaataagaaaatgttcGACCACATTGCTCCGTTTACTCAATAACATCTTGGATCTAAGCAAGGTGGAATCTGGAAAACTTGTCCTAGAAGATGCAGAATTTGACTTGGGAAAGGAACTCGAAGGGCTTGTAGATATGTTTTCTGTGCAATGCATTAACCACAGTGTAGAAATTATTTTAGACCTTTCTGATGATATGCCAAAGATAGTTCGGGGAGATTCTGATAGAGTTGTTCAAATTTTTGCGAATTTGATCAACAACTCAATCAAGTTTACTCTATCCGGTCACATAATTCTGAGAGGATGGTGTGAAAATCCAAATTCTTATGATGATAACGAAAGTTTTACTGTGGAGCAGAAGAAATTGGCGTGTTCCCAGAAGACCATAACAAAGCAGCATGAAAACCATGCAAAGAAGACTTCTAATAATGATAACAAAATGATACTTTGGTTTGAAGTCGATGACACGGGCTGTGGTATTGACCCAAGTAAATGGGATTCGGTGTTTGAAAGCTTTGAGCAAGCTGACCTATCAACTACTAGACTGCATGGAGGCACTGGTCTTGGTCTTTGCATTGTCAGATCCTTGGTTAATAAGATGGGTGGAGAAATTAAGATTATCAAAAAGGAAGGCCCAGGAACACTAATGCGATTATATCTGCAACTCACCGCACCTGTCGATGCCGCAGAACAACAATGTCAAGTAGATTTTGCTAACAATAACTTAGTGGTACTTCTTGCACTACATGGCAACATGAGTAGATTAATTACATCTAAGTGGTTAAAGAAAAATGGCGTGGTCACTATGGAAGCATCTGAATGGAATGGATTAACACAAGTTCTAAAAGAACTATTTCATGCAAAAACTCCAACTCATAACAATGAATTCGATGCACATTATTCAGCTCATCGGGGTCTGAAATCTAAACTGCCGAGCCTGCAAGAATTGACAAACCCAACATTTGTCATTGCCGTTGACATTGATCTACTTGACTTGAGCACAGATATTTGGAAGGAACAACTTAACTTCCTTCACAAGTACTACGCAAGAGGAAAATTCATATGGTTACAAAACCATGACTCGTCCAATACCGTAAAGACGGAGCTTCGCAAGAAAGGACATATACTAATTGTCAACAAACCTCTTTACAAAGCAAAGATGATTCATATTTTGGAAGATGTCATAAAGGAAAGAAATATTGAGGTaccaaagaaaaatatgattacTCCAAGAACCACAGTGAAAGAGAGTGATTTGCATGAGAGTTTTGAAATCGATTATAATCATTGTGATGTTGCAAGCTCAGATGGTTCTGACATATCGGAAATTGGTAGTTCTAATCCATCATCACTATATCTAAAAAGTAACTGCTTGTTAGGATTAACTAATGAATATTTGGAACAAAATAATTCTAGGAAAGAAGCATCCATTTCGAAAAGAGAAAAAGGTGAAGATTCTGAATGTGGTAGGGTCAATGGTTCAACTAAAGCTGTGAATGGAAAGAAGTCTCTTGAAGGTTTGAGGATATTGCTTGCAGAAGACACAGCAGTAATTCAAAGGGTTGCGACCATAATGCTAGAAAAAATGGGAGCCATTGTTGTTGCTGTAGGTGATGGACAACAGGCAGTGGATGCTCTAAATGGCACGCTTGGTGCCGAAGATTGTAGAAAAGAGTCTCTCTTAAAGGAAAGGAACAAAGAAACATCTCAAACTGAGATTCTAAGCTTCCCTGCATATGACTTGATCCTTATGGATTGCCAGATGCCAAAGATGGATGGATATGAAGCAACAAAAGAAATAAGGAAATCAGAAGTAGGAAGTGGATTCCACATTCCAATTGTTGCTCTTACAGCTCATGCAATGTCATGTGATGAAGCCAAATGTTTGGAAGTTGGCATGGATGCTTATTTAACTAAGCCAATTGACTTTAAACTTATGGAGTCTACCATTCTTTCACTCACAAGAGAGAAACCTTAA 5094 0.405 MTSQNPNHKNSLYPEVIDSNPEASSPFISNPNPTSSSLYPTIDVSDLVEDLFPENTTPSAPPIEAEYFFPENTSPSAPPIDAEDFFPENTSPSDPPIAAEDILIKVPGAILHLIDQQYSVELAIGELTIIRLRQGHNTLAIYARVADEIQWPLAKDEAAVKVDDSHYFFCFCVPKEKCDSDSSDSSDEEKEKDKDKKKNLRSKSRRKGDDGLELLSYGLTIASKGQEDLVKELDEVLKECSNFSVQQVSEKAKKKGEALDASLAMEISPEDLDTVKEKKELMEERCAAYWTTLAPNVEDYSGTAAKLIAAGSGQLVKGILWCGDVTVDRLKWGNEFMKKRMGPPSQAEISPQTLRRIKRAKKVTKMTESVATGVLTGVVKVSGFFTSSVANSKAGKKFFKLLPGEVVLASLDGFSKLCDAVEVAGKNVMSTSNTVTTEIVHHRYGEEAAKATSEGLDAAGHAVGTAWAAFKIRQALNPKSVLKSASMAKSAAKAAADEYKAKKSKVSYKWQKTKDKSSSVCLPGSSSPIMATKCMHVFDRLMFSVTCWKKSRTQTGRRKFHRDVEKEEFQYASTQCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTTKSLNSLAYDLRYELLQRPILRMWNILNSTAEITTAQVKLSEYVIRSHNNLATQEDHVEMYEAMRAVTWALFSSRKALNSITVKYGNGFVQAFHRDLKDNNTFYIYTDLAYNETSEALNDKDIHNKTAIWYREQLDPFSGEKIGKAMKIAPEDSISIAGMSQVPDGVASWHVSVSKFTDSPLLSAALPVWDSSNKSIVAVVGVTTALYSVEQLMKELVDKHSGHMYLTSQKGYLLATSTNDPLLTNSTKKPKLKMAVDCDNEVIREGARWLQKTYGNNFPPSHEVHVENARLGHQQYYIDSFFLNLKKLPLVGVIILPRKHIMGQADQRAYKTLVILISASLCIIVIGCVCILILTNGVSKEMNLRAELISHLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILLSDDCLTNEQYATVTQIRKCSTTLLRLLNNILDLSKVESGKLVLEDAEFDLGKELEGLVDMFSVQCINHSVEIILDLSDDMPKIVRGDSDRVVQIFANLINNSIKFTLSGHIILRGWCENPNSYDDNESFTVEQKKLACSQKTITKQHENHAKKTSNNDNKMILWFEVDDTGCGIDPSKWDSVFESFEQADLSTTRLHGGTGLGLCIVRSLVNKMGGEIKIIKKEGPGTLMRLYLQLTAPVDAAEQQCQVDFANNNLVVLLALHGNMSRLITSKWLKKNGVVTMEASEWNGLTQVLKELFHAKTPTHNNEFDAHYSAHRGLKSKLPSLQELTNPTFVIAVDIDLLDLSTDIWKEQLNFLHKYYARGKFIWLQNHDSSNTVKTELRKKGHILIVNKPLYKAKMIHILEDVIKERNIEVPKKNMITPRTTVKESDLHESFEIDYNHCDVASSDGSDISEIGSSNPSSLYLKSNCLLGLTNEYLEQNNSRKEASISKREKGEDSECGRVNGSTKAVNGKKSLEGLRILLAEDTAVIQRVATIMLEKMGAIVVAVGDGQQAVDALNGTLGAEDCRKESLLKERNKETSQTEILSFPAYDLILMDCQMPKMDGYEATKEIRKSEVGSGFHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKLMESTILSLTREKP 1697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03533 1697 PANTHER TWO-COMPONENT HISTIDINE KINASE 1516 1694 - -
Tsu04g03533 1697 SMART HKATPase_4 1111 1263 IPR003594 -
Tsu04g03533 1697 MobiDBLite consensus disorder prediction 1510 1533 - -
Tsu04g03533 1697 Pfam Response regulator receiver domain 1548 1686 IPR001789 GO:0000160
Tsu04g03533 1697 SMART REC_2 1546 1689 IPR001789 GO:0000160
Tsu04g03533 1697 ProSiteProfiles Histidine kinase domain profile. 1005 1263 IPR005467 -
Tsu04g03533 1697 PANTHER OSMOSENSOR HISTIDINE KINASE 530 1490 - -
Tsu04g03533 1697 Gene3D - 1529 1692 - -
Tsu04g03533 1697 Pfam Senescence domain 307 493 IPR009686 -
Tsu04g03533 1697 CDD REC_hyHK_CKI1_RcsC-like 1548 1689 - -
Tsu04g03533 1697 Gene3D - 986 1065 - -
Tsu04g03533 1697 MobiDBLite consensus disorder prediction 1 40 - -
Tsu04g03533 1697 MobiDBLite consensus disorder prediction 1512 1528 - -
Tsu04g03533 1697 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 985 1065 IPR036097 GO:0000155|GO:0007165
Tsu04g03533 1697 CDD HisKA 999 1060 IPR003661 GO:0000155|GO:0007165
Tsu04g03533 1697 PANTHER TWO-COMPONENT HISTIDINE KINASE 530 1490 - -
Tsu04g03533 1697 MobiDBLite consensus disorder prediction 177 206 - -
Tsu04g03533 1697 Gene3D - 1066 1265 IPR036890 -
Tsu04g03533 1697 PANTHER OSMOSENSOR HISTIDINE KINASE 1516 1694 - -
Tsu04g03533 1697 SUPERFAMILY CheY-like 1544 1694 IPR011006 -
Tsu04g03533 1697 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1053 1259 IPR036890 -
Tsu04g03533 1697 SMART HisKA_10 998 1064 IPR003661 GO:0000155|GO:0007165
Tsu04g03533 1697 Pfam His Kinase A (phospho-acceptor) domain 999 1064 IPR003661 GO:0000155|GO:0007165
Tsu04g03533 1697 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1111 1262 IPR003594 -
Tsu04g03533 1697 PRINTS Bacterial sensor protein C-terminal signature 1206 1216 IPR004358 GO:0016310|GO:0016772
Tsu04g03533 1697 PRINTS Bacterial sensor protein C-terminal signature 1188 1202 IPR004358 GO:0016310|GO:0016772
Tsu04g03533 1697 PRINTS Bacterial sensor protein C-terminal signature 1223 1241 IPR004358 GO:0016310|GO:0016772
Tsu04g03533 1697 PRINTS Bacterial sensor protein C-terminal signature 1247 1260 IPR004358 GO:0016310|GO:0016772
Tsu04g03533 1697 ProSiteProfiles Response regulatory domain profile. 1547 1693 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03533 Tsu-Chr4 44514041 44525122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03533 537 1694 Histidine Kinase Gene Family AT2G17820 64.388 0.0 1502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu04g03533 Senescence 6e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03533 - - gmx:100801970 1867.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03533 04 44514041 44525122 Tsu04g03533 04 44514041 44525122 ECH
Tsu05g00859 05 7438762 7443721 Tsu04g03533 04 44514041 44525122 PCT