Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03524 ATGATAATGGTGAATACATCAATGCTTAATAAGGATGGATATGAATACGAGTTTATTGGAAAGATTGTTGAACATGTTTCCAAGAAAATTAACCGTATTGCGTTACCCGTTGCTGACTACCCAGTTGGACTTGAGTCTCGAATGCTAGAAATAAATTCACTTCTTGATATTGGGTCCGATGATGAGGTCAACATGATTGGTATCCATGGAATTGGAGGGATAGGGAAAACAACACTTTCTATTGCGGTTTATAATTTGATTGCCGACCACTTTGAAGCGTTGTGTTTTCTTGAAAATGTGAGAGTAAATTCAAACAAACACGGGATCGAACATCTCCAAAAGATTCTTCTTTCTGAAACACTCGGAGAGAAGAAAATTAAGTTATCAAGTGTCAAACAAggaatttcaataataaaacataggctccaacaaaaaaaagttcttCTGATTTTAGATGATGTTGACAAAAGAGAACAACTGGAGGCCTTGGTTGGAGGGTCTGATTGGCTTGGTTCTGGAAGCAGAGTTATTATTACAACTCGAGACAAACATTTGTTGGAAAGTCATGGGATTAACAAAACATATGAATTAAATGTGTTAGATGAGAAAGATGCTCTTCAATTGCTTACTTGGAAAGCTTTCAAAACAGATAAATTCGATCCTAGTTACTTGGATGTCATGAAACGTGTAGTAGCCTATGCTTCGGGACTTCCATTGGCTTTAACAATAATGGGTTCCAATTTATTTGGAAAGAATATACAAGAATGGGAATCTGCATTACATCGATATGAAATCATTCCTAATAAAGAGATCCATAACATACTCAAAGTAAGTTTTGATGCTTTGGAGGAAGATGAACAAAGTGTTTTTCTTGACATAGCTTGTTTCTACACAGGAATTGAACATTCATTGAAAAGTGTAGAAAAGATGCTTCATGTTCATTATGATGCTTGCATGAAATATCATATCAGAGTATTGGTTGAAAAATCTCTCATAAAGATTAGCTCACTTGGTCACTTCACTGTACATGACTTGATAGAGGACATGGCTAAAGAAATTGTTCGCTTGGAATCACCAGACGAACCTGGAAAACGTAGTCGATTATGGTTTCATGAAGATATAATTCAAGTTTTAGAAGACAATACAGGAACTAGTGCAATTAAAATCATACATCTGATGTGTGAAAATGAGATAGAATTGGATGAATCGGCCTTCAAGAAGATGAGAAACCTCAAAACCCTTGTTATCAAAGCTGGCCATTTTTCCAAAGGACCCAAATACCTTCCAAATAGTTTAAGAGTAGTCGAATGGGAGGGATATCCTTCAGAATATTTACCACATGATTTTCATCCAAAGAAACTTGCCATATTCAACTTACAAAAAAGTTGCATAGTTTCACTCAAGTTGCCTGACTCATTGAAAGTAaATTGTTTGACAGAAATACCTGATGCGTCTTCTCTCTTAAATTTAGAAGAATTTTCATTTGAGAATTGTAAGAATTTAACTACAATTCACGAATCGGTCGGGTTATTGGATAAACTTAAAGTCTTGAGTGCTAGAGGTTGTAGTAAGCTTAGAAGATTTCCACCCATCAAATTGGTGTCCCTTAAGCAACTCGATCTTTCATTTTGCATTAAGCTCAAGAGTTTTCCACAAATATTAGGGAAGATGGAAAATATAACAGAACTTGTGTTGGAAGAATCTCCAATAAAAGAGTTGCCATGTTCATTCCAAAATCTTACTCATCTTCGAACATTACAACTACGTTATTGTGGAACGTTTAGTTTACCAAGTAACTTTTTCATGATGCCAAATTTGGTCGAGATTATTGCGTGGAGATTAGAAGGGTGGATATTGCCAATGCAAGCCGAGAGTGAACAAAGAGTTATCTCAGCAGTGTCTTCGAATGTAGAATGTCTTCGTCTCCCATTTTGCAAACTATCAAATGACTTTTTTCAAACAGGTCTCACATGGTTTAGAAATGTGAAAAAATTAATCTTGACGAATAATAATTTCACAATTCTTCCGGAATGCATCAAAGAATATCATTTGTTAAGGGAGCTTTGTTTGGATGATTGCCAATATCTTCAAGAAGTTAGAGGAATAGCGCCAAACTTGGAAATATTTTATGCTCTACGATGTAAATCTTGGACTCCTACAGAAATGCTACTGAATCAgGAATTGCATGAAGCTGGAAGTACCATGTTTTATTTGCCAGGATCTAGAATTCCAGATTGGTTCGAGCACTGTAGTACCGGAGGAtcaatttctttttggtttCGTAACAAGTTTCCTGCTATAGCTCTTTGTCTTCTTCCCGGTTTGATGTTTGCCGGATCTCTCATCTATCCTATTGTGATCATCAATGGCAATAAATGTAAACTTGACTCTAGGACCAGCCAATACAAAGGAGCTCCTTATTTGTCGGTTGAACCAgatcatacatatatttttgaTCTTCAAAAGATAAAGTTCAATGATAATTTGGATGAAGCGATCTTAGAAAATGAATGGAACCACGTGGAGATTATGTACGAGGaaatcaCAAATCTCCAAgAGTTGACAGAGATAGATGCTGCCAAAAATTGGCCTTGCAAGGATGGCGGCATACCAAAAACATGGCGATTTGACCCATTAACATCACAAACTCTAGCGTACTCTGTGGCGAAGTTCAGAAAAGTGGTCATTTGA 2691 0.3538 MIMVNTSMLNKDGYEYEFIGKIVEHVSKKINRIALPVADYPVGLESRMLEINSLLDIGSDDEVNMIGIHGIGGIGKTTLSIAVYNLIADHFEALCFLENVRVNSNKHGIEHLQKILLSETLGEKKIKLSSVKQGISIIKHRLQQKKVLLILDDVDKREQLEALVGGSDWLGSGSRVIITTRDKHLLESHGINKTYELNVLDEKDALQLLTWKAFKTDKFDPSYLDVMKRVVAYASGLPLALTIMGSNLFGKNIQEWESALHRYEIIPNKEIHNILKVSFDALEEDEQSVFLDIACFYTGIEHSLKSVEKMLHVHYDACMKYHIRVLVEKSLIKISSLGHFTVHDLIEDMAKEIVRLESPDEPGKRSRLWFHEDIIQVLEDNTGTSAIKIIHLMCENEIELDESAFKKMRNLKTLVIKAGHFSKGPKYLPNSLRVVEWEGYPSEYLPHDFHPKKLAIFNLQKSCIVSLKLPDSLKVNCLTEIPDASSLLNLEEFSFENCKNLTTIHESVGLLDKLKVLSARGCSKLRRFPPIKLVSLKQLDLSFCIKLKSFPQILGKMENITELVLEESPIKELPCSFQNLTHLRTLQLRYCGTFSLPSNFFMMPNLVEIIAWRLEGWILPMQAESEQRVISAVSSNVECLRLPFCKLSNDFFQTGLTWFRNVKKLILTNNNFTILPECIKEYHLLRELCLDDCQYLQEVRGIAPNLEIFYALRCKSWTPTEMLLNQELHEAGSTMFYLPGSRIPDWFEHCSTGGSISFWFRNKFPAIALCLLPGLMFAGSLIYPIVIINGNKCKLDSRTSQYKGAPYLSVEPDHTYIFDLQKIKFNDNLDEAILENEWNHVEIMYEEITNLQELTEIDAAKNWPCKDGGIPKTWRFDPLTSQTLAYSVAKFRKVVI 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03524 896 Gene3D - 23 193 IPR027417 -
Tsu04g03524 896 PRINTS Disease resistance protein signature 65 80 - -
Tsu04g03524 896 PRINTS Disease resistance protein signature 234 248 - -
Tsu04g03524 896 PRINTS Disease resistance protein signature 141 155 - -
Tsu04g03524 896 PRINTS Disease resistance protein signature 531 547 - -
Tsu04g03524 896 SUPERFAMILY "Winged helix" DNA-binding domain 269 379 IPR036390 -
Tsu04g03524 896 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 293 IPR027417 -
Tsu04g03524 896 Gene3D Ribonuclease Inhibitor 624 881 IPR032675 -
Tsu04g03524 896 Gene3D Ribonuclease Inhibitor 373 613 IPR032675 -
Tsu04g03524 896 PANTHER ARCHAEAL ATPASE 8 845 - -
Tsu04g03524 896 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 845 IPR044974 GO:0006952
Tsu04g03524 896 Gene3D - 199 278 IPR042197 -
Tsu04g03524 896 Pfam NB-ARC domain 58 264 IPR002182 GO:0043531
Tsu04g03524 896 SUPERFAMILY L domain-like 384 722 - -
Tsu04g03524 896 Gene3D - 279 353 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03524 Tsu-Chr4 44418216 44434183 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03524 12 606 WRKY Transcription Factor Family AT4G12020 32.964 1.36e-66 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03524 - - mtr:MTR_8g087130 1129.01