Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03518 ATGGCGGAAGAGAGATTCACCGGTGTCGTTCAATGGTTCAACAACAGCAAAGGCTTCGGATTCATCAAACCCGATAACGATTCCGAAGATGTCTTCGTTCATCAATCTTCCATCAGATCCGATGGATTCCGCACTCTCGTTGAAGGCGATCGTGTCGAATTCGCTATCGCATCCAGCGATAACGACAAAACCAAAGCCGTCGATGTCACCGGTCCTAACGGCGCTCCTCTGCAATCCAAACAGGATTCATACGGTGGAGGCGGTCGTGGATTTGGTGGTGGATTTAGGGGTGCTGATCGGCGTAATGGTGGCGGCGGTGGTGGTGGCTGTTACAACTGTGGTGATACCGGCCACATCGCTAGGGAATGCAACCGGATCAATAACTCTGGTGGTGGCGGTGGAGGCGCAGGTTGTTATAACTGCGGTGACACTGGCCACATCGCTAGGGATTGCAACCGGAGCAATAACTCTGGCGGAGGTGGAGGTGGCGGCGCATGTTATACTTGCGGCGCGTTTGGTCATATCGCTAGGGATTGCATGCGTGGAGGCAACATCAGCGGTGGCGGAATTGACCGTGGCAGCGGAGGTGGCACTTCATGCTACAGGTGTGGCGGAATCGGTCATATTGCAAGAGATTGCGCTACTCCAAGCACCGGAAACAGCGGTGGTGGTTGCTACAAGTGTGGCGAGGTTGGTCACATTGCTAGGGATTGCAGCGTTGAAGGTGGAAGGTTTGATGGTGGTGGCAATGGAAGGTTTGATGGTGGCAACAGAAGGTTTGGCGGCGGCGATGGAGGGAAGACCACATGCTTCAATTGTGGGAAGCCTGGACATTTTGCAAGGGAGTGCGTTGAGGCTTCTGGTTGA 867 0.5421 MAEERFTGVVQWFNNSKGFGFIKPDNDSEDVFVHQSSIRSDGFRTLVEGDRVEFAIASSDNDKTKAVDVTGPNGAPLQSKQDSYGGGGRGFGGGFRGADRRNGGGGGGGCYNCGDTGHIARECNRINNSGGGGGGAGCYNCGDTGHIARDCNRSNNSGGGGGGGACYTCGAFGHIARDCMRGGNISGGGIDRGSGGGTSCYRCGGIGHIARDCATPSTGNSGGGCYKCGEVGHIARDCSVEGGRFDGGGNGRFDGGNRRFGGGDGGKTTCFNCGKPGHFARECVEASG 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03518 288 Gene3D - 193 250 - -
Tsu04g03518 288 ProSiteProfiles Zinc finger CCHC-type profile. 225 238 IPR001878 GO:0003676|GO:0008270
Tsu04g03518 288 MobiDBLite consensus disorder prediction 64 97 - -
Tsu04g03518 288 ProSiteProfiles Zinc finger CCHC-type profile. 166 179 IPR001878 GO:0003676|GO:0008270
Tsu04g03518 288 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Tsu04g03518 288 Gene3D - 97 132 - -
Tsu04g03518 288 Gene3D - 135 187 - -
Tsu04g03518 288 Gene3D - 262 288 - -
Tsu04g03518 288 PANTHER COLD SHOCK DOMAIN PROTEIN 2 101 179 - -
Tsu04g03518 288 PANTHER COLD SHOCK DOMAIN PROTEIN 2 154 287 - -
Tsu04g03518 288 ProSiteProfiles Zinc finger CCHC-type profile. 200 213 IPR001878 GO:0003676|GO:0008270
Tsu04g03518 288 ProSiteProfiles Zinc finger CCHC-type profile. 110 123 IPR001878 GO:0003676|GO:0008270
Tsu04g03518 288 SMART csp_8 7 72 IPR011129 GO:0003676
Tsu04g03518 288 SUPERFAMILY Nucleic acid-binding proteins 3 71 IPR012340 -
Tsu04g03518 288 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Tsu04g03518 288 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Tsu04g03518 288 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Tsu04g03518 288 ProSiteProfiles Zinc finger CCHC-type profile. 270 283 IPR001878 GO:0003676|GO:0008270
Tsu04g03518 288 SUPERFAMILY Retrovirus zinc finger-like domains 257 284 IPR036875 GO:0003676|GO:0008270
Tsu04g03518 288 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Tsu04g03518 288 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 96 - -
Tsu04g03518 288 SUPERFAMILY Retrovirus zinc finger-like domains 93 127 IPR036875 GO:0003676|GO:0008270
Tsu04g03518 288 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Tsu04g03518 288 SUPERFAMILY Retrovirus zinc finger-like domains 128 181 IPR036875 GO:0003676|GO:0008270
Tsu04g03518 288 PANTHER COLD SHOCK PROTEIN 2 1 96 - -
Tsu04g03518 288 PANTHER COLD SHOCK PROTEIN 2 101 179 - -
Tsu04g03518 288 Pfam Zinc knuckle 109 123 IPR001878 GO:0003676|GO:0008270
Tsu04g03518 288 Pfam Zinc knuckle 224 239 IPR001878 GO:0003676|GO:0008270
Tsu04g03518 288 Pfam Zinc knuckle 137 151 IPR001878 GO:0003676|GO:0008270
Tsu04g03518 288 Pfam Zinc knuckle 269 283 IPR001878 GO:0003676|GO:0008270
Tsu04g03518 288 Pfam Zinc knuckle 165 180 IPR001878 GO:0003676|GO:0008270
Tsu04g03518 288 Pfam Zinc knuckle 200 214 IPR001878 GO:0003676|GO:0008270
Tsu04g03518 288 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Tsu04g03518 288 ProSiteProfiles Zinc finger CCHC-type profile. 138 151 IPR001878 GO:0003676|GO:0008270
Tsu04g03518 288 SMART c2hcfinal6 269 285 IPR001878 GO:0003676|GO:0008270
Tsu04g03518 288 SMART c2hcfinal6 109 125 IPR001878 GO:0003676|GO:0008270
Tsu04g03518 288 SMART c2hcfinal6 199 215 IPR001878 GO:0003676|GO:0008270
Tsu04g03518 288 SMART c2hcfinal6 165 181 IPR001878 GO:0003676|GO:0008270
Tsu04g03518 288 SMART c2hcfinal6 137 153 IPR001878 GO:0003676|GO:0008270
Tsu04g03518 288 SMART c2hcfinal6 224 240 IPR001878 GO:0003676|GO:0008270
Tsu04g03518 288 SUPERFAMILY Retrovirus zinc finger-like domains 193 240 IPR036875 GO:0003676|GO:0008270
Tsu04g03518 288 PANTHER COLD SHOCK PROTEIN 2 154 287 - -
Tsu04g03518 288 Gene3D - 1 83 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03518 Tsu-Chr4 44343053 44344452 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Tsu04g03518 CSD 7.4e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03518 K09250 - gmx:100806783 302.367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03518 04 44343053 44344452 Tsu04g03518 04 44343053 44344452 ECH