Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03517 ATGGCAGACATAGTAAAACAACTTTTAGCAAAACCGATCCAATTAGCAGACCAAGTAAGCAAAGCAGCAGAAGAAGGAAGTTCATCATTCAAACAAGAATGTTTAGAATTGAAATCCAAAACCGAAAAACTCGCTTCTCTTCTCCGACAAGCCGCAAGATCAAGCTCCGATTTATACGAAAGACCAACACGTCGTATCATCGGAGACACCGAACAGGTTCTTGAAAAAGCATTAACCTTAGTTCTAAAATGTAAAGTCAACGGTCTAATGAAACGCGTTTTCAGCATAGTTCCATCTGCTGCTTTTCGGAAAATGTCTTCTCATCTTGAGAATTCAATCGGTGATGTTTCATGGCTTCTTCGTGTTTCAGCTCCGGCTGAAGAAGGTAGTTATGAATGTCTAGGTCTTCCACCTATTGCTTCTAATGAACCGATTTTAGGTTTAATTTGGGAACAAATTGCGATTCTTCATAATGGATCTTTTGATGATCGATCTGATGCTGCTGCTTCTTTGGTTTCACTTGTTCGTGATAATGATCGGAATGGGAAATTGATTATTGAAGAAGGTGGTGTTGGTCCTTTATTGAAACTTTTGAAAGAAGGTAAAAAAGAAGGTCAAGAAAATGCTGCTAAAGCTATTGGACTTTTAGGTCGTGATGCTGAAAGTGTTGAAGTTATGATTCATGCTGGTGTTTGTTCTGTTTTCGCGAAAATTCTTAAAGAAGGTCCTATGAAAGTTCAAGCTGTTGTAGCTTGGGCTGTTTCTGAACTTGTTTCTAAGTATCCTAAATGTCAAGATGTTTTTGCTCAGCATAATATTGTTAGGTTACTTGTTAGTCATATTGCATTTGAAACTGTTCAGGAACATAGTAAATATGCGATTGTTAGTAATAAGCCGAATTCGATGCATGCTGTTGTCATGGCTAGTAGTAATGGTGGTGTTAGTAATAGTGGTGATATCTCGGGTTCGAATGATGTGAAAAAAGAGACTGAAGATGAGATGAAAATTCGGATAAATCATCCTTTAGGTGATAGGTCTACAAATCAGATGCATAAAGTGGTGACAAGTACTATGGCAAAGCATGCTGCAAGTGCAAACAGCAACAAGAATCTGAAAACAATTGAAAGCGGTGAAGTGGCTGGTCATTCTAATGGGAATGGGAACGGTAGCACGAAGCAAGGCTATTCGTATTCTGGAATTAACATGAAAGGAAGGGAACTTGAGGATGCTGAGAGTAAGGCTCATATGAAGGCAATGGCAGCGAAGGCTCTTAGGTATTTAGCAAAGGGTAACTCGGGGATTTGTCGTAGCATAACAGAATCAAGGGCTTTGTTATGTTTTGCGATTCTACTTGAGAAAGGACCTGAAGAAGTGAAGTATAATTCTGCTTTGGCGTTGAAAGAGATTACTGCAGTGGCTGAGGAAGATCCTGAATTGAGACGATCCGCGTTCAAACCAAACACTCCAGCTTGTAAAGCGGTTGTTGATCAAGTGATTGATATTATCGACAAAGAAGATAAGAGACTACTGATTCCTTGTATCAAGGTAATTGGGAGTTTGGCGAGGACGTTCAGAGCAACTGAGACAAGGATAATTGGTCCGCTGGTTCGACTTCTCGATGAAAGAGAGGCTGAAGTATCAAAAGAGGCTGCAGACTCACTTGCGAAATTTGCCTGCAATGATAACTATCTCCACCTTGATCACTCTAAGGCAATTATAAGCTTTGGTGGCGCAAAACACTTGGTTCAGCTTGTGTATCTCGGGGAGCAGCCAGTTCAACATTCTGCCTTGGTTCTACTATCCTATATTGCGTTGCATGTGCCAGACAGTGAAGAACTTGCTCGGGCTGAGATTCTTGGAGTTCTTGAATGGGCGTCCAAGCAACCTAACATGACTCAACATGAAACCATTGAGGCATTGTTGCAAGAATCCAAGAGTAGGCTTGAGCTTTACCAGTCTAGAGTTCTTCTTTTAGCATTGGAAGCCAAGAATGTTGCACTGCAGGAATTAATGAAGAACCGGTATAATCAGATACAAGATTTCAGCAAAATATGGCAGATAAAAAATGAAGTTGGAAAATGGTACTGGTATGAGTCAATCAGGGTCAAAGACTGCTTGATTACTCTGTCCAGATTAAGTAACATGCATCTTGGGACTCCTTATTGTTCTCATTGTGGAGATATAGAGACTACTTTGCATGTTCTTAGAGATTGTTCCTTAGCCATGGTGGTTTGGATGAATTCGTTTGCTCAACATTTAAGGGAAGGCTTCTTTGATGCAGATTTGCATAATTGGATCACAATCAGTATTGAACAGCCGAAATGGTCTGACTATTGGGCAACGACAGTTCATGCTTTATGGGAGTGGAGAAATGATGATTTTGTTATTCCTGTCAAACCGTGGGAAGCAATTTACAGTAGAGTGAAGCAATATTATTCGCATACCAAAGCACAAACAGTAGTCGGTTCGAGCAATAGCAGTGTTGAAAACATTAGGTGGTAG 2502 0.4029 MADIVKQLLAKPIQLADQVSKAAEEGSSSFKQECLELKSKTEKLASLLRQAARSSSDLYERPTRRIIGDTEQVLEKALTLVLKCKVNGLMKRVFSIVPSAAFRKMSSHLENSIGDVSWLLRVSAPAEEGSYECLGLPPIASNEPILGLIWEQIAILHNGSFDDRSDAAASLVSLVRDNDRNGKLIIEEGGVGPLLKLLKEGKKEGQENAAKAIGLLGRDAESVEVMIHAGVCSVFAKILKEGPMKVQAVVAWAVSELVSKYPKCQDVFAQHNIVRLLVSHIAFETVQEHSKYAIVSNKPNSMHAVVMASSNGGVSNSGDISGSNDVKKETEDEMKIRINHPLGDRSTNQMHKVVTSTMAKHAASANSNKNLKTIESGEVAGHSNGNGNGSTKQGYSYSGINMKGRELEDAESKAHMKAMAAKALRYLAKGNSGICRSITESRALLCFAILLEKGPEEVKYNSALALKEITAVAEEDPELRRSAFKPNTPACKAVVDQVIDIIDKEDKRLLIPCIKVIGSLARTFRATETRIIGPLVRLLDEREAEVSKEAADSLAKFACNDNYLHLDHSKAIISFGGAKHLVQLVYLGEQPVQHSALVLLSYIALHVPDSEELARAEILGVLEWASKQPNMTQHETIEALLQESKSRLELYQSRVLLLALEAKNVALQELMKNRYNQIQDFSKIWQIKNEVGKWYWYESIRVKDCLITLSRLSNMHLGTPYCSHCGDIETTLHVLRDCSLAMVVWMNSFAQHLREGFFDADLHNWITISIEQPKWSDYWATTVHALWEWRNDDFVIPVKPWEAIYSRVKQYYSHTKAQTVVGSSNSSVENIRW 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03517 833 Gene3D - 405 682 IPR011989 -
Tsu04g03517 833 SUPERFAMILY ARM repeat 153 632 IPR016024 -
Tsu04g03517 833 PANTHER ARMADILLO REPEAT ONLY 4 1 655 - -
Tsu04g03517 833 SMART arm_5 565 605 IPR000225 GO:0005515
Tsu04g03517 833 SMART arm_5 177 218 IPR000225 GO:0005515
Tsu04g03517 833 SMART arm_5 219 259 IPR000225 GO:0005515
Tsu04g03517 833 SMART arm_5 431 471 IPR000225 GO:0005515
Tsu04g03517 833 Gene3D - 3 122 IPR036537 GO:0007166
Tsu04g03517 833 PANTHER ARMADILLO REPEAT ONLY 2 1 655 - -
Tsu04g03517 833 Gene3D - 150 317 IPR011989 -
Tsu04g03517 833 Pfam Armadillo/beta-catenin-like repeat 183 215 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03517 Tsu-Chr4 44331494 44335379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03517 147 281 U-box Gene Family AT3G46510 31.111 2.52e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03517 - - mtr:MTR_8g075770 1081.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03517 04 44331494 44335379 Tsu04g03517 04 44331494 44335379 ECH
Tsu05g00843 05 7223968 7226432 Tsu04g03517 04 44331494 44335379 PCT