Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03516 ATGCTCTCAGTTTCTTTTCCCACACCTTTCACCACCGCCGTCAATTTCGCCGGCAAAACCATCTCATCGCAGCCGTGCCACGTCAGATCCCGGCGAATTCTTATTTGTGCCACAGCCACCGCCACTGAAGCTACCTCTACTCAGCTTCCTCACGCCATGGCTTTATCTTCATGCACGTCGCTTTATGATATTCTTGGAATTGCGGCCGCTGCTTCTGATCAGGAGATTAAGACAGCTTACCGGCGACTCGCGAGAGTTTCTCATCCTGACGTGGCGGCGGTTGATCGGAAGGATTCGTCGGCGGATGAGTTCATGAAGATTCGTGATGCGTATTCTACGCTGTCAGATCCTGAGAAGAGAGGTATCTATGATAGAAGCTTGTTTCGGCGTCAGCAACCGCTTACGGCGATCAGATTTTCTGGACATGGTTGTCGGAACTGGGAAACGGACCAGTGTTGGTAG 462 0.5173 MLSVSFPTPFTTAVNFAGKTISSQPCHVRSRRILICATATATEATSTQLPHAMALSSCTSLYDILGIAAAASDQEIKTAYRRLARVSHPDVAAVDRKDSSADEFMKIRDAYSTLSDPEKRGIYDRSLFRRQQPLTAIRFSGHGCRNWETDQCW 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03516 153 CDD DnaJ 62 116 IPR001623 -
Tsu04g03516 153 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 3 153 - -
Tsu04g03516 153 SUPERFAMILY Chaperone J-domain 55 130 IPR036869 -
Tsu04g03516 153 PANTHER - 3 153 - -
Tsu04g03516 153 ProSiteProfiles dnaJ domain profile. 60 127 IPR001623 -
Tsu04g03516 153 Pfam DnaJ domain 61 124 IPR001623 -
Tsu04g03516 153 SMART dnaj_3 59 119 IPR001623 -
Tsu04g03516 153 Gene3D DnaJ domain 45 139 IPR036869 -
Tsu04g03516 153 ProSitePatterns Nt-dnaJ domain signature. 104 123 IPR018253 -
Tsu04g03516 153 PRINTS DnaJ domain signature 62 80 IPR001623 -
Tsu04g03516 153 PRINTS DnaJ domain signature 80 95 IPR001623 -
Tsu04g03516 153 PRINTS DnaJ domain signature 99 119 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03516 Tsu-Chr4 44303077 44303900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03516 62 124 C2H2 Transcription Factor Family AT1G74250 40.299 1.62e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03516 - - cam:101494220 206.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03516 04 44303077 44303900 Tsu04g03516 04 44303077 44303900 ECH
Tsu05g00840 05 7202677 7203869 Tsu04g03516 04 44303077 44303900 ECH