Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03498 ATGGCCATTAGAAAATCCAACAAGTTACCACAACCAGATGTTATAATCAAGCAAATTCTTAAAAGATGTTCAAGTTTTGGAAAAAAACAGGGGTACAATGAACATGATCTTCCTGAAGATGTACCTAAAGGTCATTTTGTTGTCTATGTTGGAGAGAATAGAACAAGATATATTGTTCCAATTTCATGGTTGCCTCATCCACAGTTTCAAAGTTTGCTTCAAAGAGCTGAGGAGGAATTTGGATTCAATCATGACATGGGCCTTACTATCCCTTGTGATGAAGTTGTTTTCGAGTTTCTTACTTCATTGATCAGATAA 318 0.3553 MAIRKSNKLPQPDVIIKQILKRCSSFGKKQGYNEHDLPEDVPKGHFVVYVGENRTRYIVPISWLPHPQFQSLLQRAEEEFGFNHDMGLTIPCDEVVFEFLTSLIR 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03498 105 Pfam Auxin responsive protein 28 103 IPR003676 GO:0009733
Tsu04g03498 105 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 6 105 IPR003676 GO:0009733
Tsu04g03498 105 PANTHER AUXIN-INDUCED PROTEIN 15A-LIKE 6 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03498 Tsu-Chr4 44173541 44174374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03498 5 104 Calmodulin-binding Proteins AT4G34750 45.098 4.18e-20 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03498 K14488 - gmx:100500218 187.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00826 05 7046510 7047186 Tsu04g03498 04 44173541 44174374 ECH
Tsu07g00274 07 2097593 2098397 Tsu04g03498 04 44173541 44174374 ECH
Tsu04g03498 04 44173541 44174374 Tsu04g03498 04 44173541 44174374 ECH
Tsu02g02514 02 26027776 26029528 Tsu04g03498 04 44173541 44174374 ECH