Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03492 ATGAAGCGTGCGAGGAAATCTAATAGGGTTTCTTGGGCTCCTGGTTCAAATCTCTGTCAgGTAAAATTGTTCTTGTCTGATGATTACCCATCAAAAGTTGGCCTGAAATCACAAGATAATCTTGAAGGAAAGGCACCGTCAATGTTGTGTTCTAGCACCAATGAATATGTTGATTTACCTCCCGGGTTTGAAAGCAGTCATTTTCCGAACCAATCAAAGGTTGAATTCTCCCACATTCCAAAGATAACATGGGAATGCCCTCTCCCGTTTGTTTTCAGTTCTACTTGGCTAGTTGCAGCTGGTGAAGAAAGTAGGGAGAAAgagtttcagactctgagagaAATAAGAGTGCTTGAAGCAGTTTATCCCCGACAGTCTGCCATTCCTCCTAGCCCTTCTATTTCTTTAGATGTAGAAGAGGAAGATTATGATGATAACCTTACTCCTCTCGTCCCTCTCATTCCCATCGAGGAGGAAGAGTCCATGGCGACAGCAGTGAGCCCTCAACCCAATGGCCAGTCACAGAACTTGCATAAATATATGTCAGCACCAACTTCCTCTCGTACCATCTCCTCGGATGCTTGTGTAATGCCCTTAGCTGGGGTATCTTCTGGTTCGGTAGCTGACATAGCAGCAGCCTCTGATGTTGTGGCAGCCATCTTGAAGAGTAAGGAGCAAGGAGGCTTAATTGATATGGATCTACTGGTTAAAATATTCAATGACCCGAAAATGATTGAGAATTTAATCAGTGAACATGGATCGAAAACTGCTACTTCAAATTCCGTGGTTACAGCCACTTCTGCATTGAAAGCTGCTATCCCATCAGTTCCTATGTTTACATCTACACCTGATGCAGCAGCTTCTAGGAACACACACACTAGTTCTGTGGGTTTTTCTGGTTTGAGGCCTTCAACTCCATCAGTTTCATCTTTGAATCATACATCTGGTAAGCCAGAAACTCTGTTTGCTCCTGCAATTCCATCATATTCAATTGTGACTTCTGCATATGATAAGCCAGCAACTGCATCAGTTCCATTGTCTAGGCCGGTATCCGGTAAACCGGTATCCCCCTCTGCTTTTATGCCCACACCTACACCTGCATCTCATATGCCCAGACCTGTCAACAATGATTTTCACATGTCAAATGGAATGCCAACTGCTTTGAATTTGCAGCCTCGGCCAGATTCATTTCTGGCTTCTGCGGCGAATCGTTCTGCATCTTTTACTTTTGCTTCCATATCTTCTAGTGAACAAAGCACAGTTCCATTGCCTCCATCTATTGGGAACTTGCACACTGTTTTGAACCATACACAAACAACTGCTAGTACAAAGCCTTATCAAACCAGTACAGGTTCAGCATCTTCTGTAAAGGATGCCAACTATTATAAAAACCTCATTAGGCAACATGGTGCAGATGGACATGACATGCAGGACTCACAAATAGGTACTCGTCGTAGTAACTTCCAAGATAAGATATCGGTAAATAACAATAATCAAGGGGAAGTGAAATTCAAAAGCAAGAAACAATGCATTTACTTTAATAGCTCAAAGGGGTGCAGGAATGGTTCCGATTGCCCCTTTCAGCATGATGTTTCAGCTCAGTCGGAAGCTGATAACTTCCTAGGGGGCAGGAGTGCTAAAAGATTTAAATTGTAA 1656 0.4251 MKRARKSNRVSWAPGSNLCQVKLFLSDDYPSKVGLKSQDNLEGKAPSMLCSSTNEYVDLPPGFESSHFPNQSKVEFSHIPKITWECPLPFVFSSTWLVAAGEESREKEFQTLREIRVLEAVYPRQSAIPPSPSISLDVEEEDYDDNLTPLVPLIPIEEEESMATAVSPQPNGQSQNLHKYMSAPTSSRTISSDACVMPLAGVSSGSVADIAAASDVVAAILKSKEQGGLIDMDLLVKIFNDPKMIENLISEHGSKTATSNSVVTATSALKAAIPSVPMFTSTPDAAASRNTHTSSVGFSGLRPSTPSVSSLNHTSGKPETLFAPAIPSYSIVTSAYDKPATASVPLSRPVSGKPVSPSAFMPTPTPASHMPRPVNNDFHMSNGMPTALNLQPRPDSFLASAANRSASFTFASISSSEQSTVPLPPSIGNLHTVLNHTQTTASTKPYQTSTGSASSVKDANYYKNLIRQHGADGHDMQDSQIGTRRSNFQDKISVNNNNQGEVKFKSKKQCIYFNSSKGCRNGSDCPFQHDVSAQSEADNFLGGRSAKRFKL 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03492 551 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45-RELATED 1 551 - -
Tsu04g03492 551 ProSiteProfiles Zinc finger C3H1-type profile. 504 532 IPR000571 GO:0046872
Tsu04g03492 551 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 1 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03492 Tsu-Chr4 44101184 44107539 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu04g03492 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03492 - - cam:101501407 645.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03492 04 44101184 44107539 Tsu04g03492 04 44101184 44107539 ECH