Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03491 ATGAGAACTCGAAATGCTGATTCATCTTCCAAATCTACAATCCCTAAAAAGACACCGCCGGCGATAAAAACCGCCGGAGAATCTCCCGCTGCAAAGCGCACATTTCCGTCCAAAGGCAGAAACCCTAAGAAGTTGGAAACATCACCCGCAACCGATCCGGATCAATCTCAAGAGAAGCAGAACACATTATCTGTAAAGAGGAAAACACCAACCAAAAGGAGAACAAAAGTGGTTGCCGACACTCCAAATGTGGAAGAGCAATTGGAGGCTGAAGTTGATGAAACTACAGTTGTAGATAATTATGAGGCAGCAGAGAGAGTGGAAGAAGCTGGAAATGTTAAAGACATTGATGCGGATAATATTGGGAGTGAGAAAGAGGGGGAACAAAGATCTATTGGGTTAACCAATGAGAGGGAACAGAAGCCCATGGAAGTAGATGAACCTGTTATTGAAAAAGTTTGTGAATTGGTCGAAAAGGGAAAGAGCATGGAAGAGGTTGAACCAATTGTTTCTCAGGATGCTTCTCTTTCTTTTAAACAACCGGGTTGCACCATTGTGGACCTCAATATATCTGTGGATGATAATGAAGATTATACTGGTGCAAAGGAGGGAAGGGAAGAGTTGAAAGAGGAAGAGTTGAATGTGGGAGAGAGAGGAAAGGAAGAGTTGAAAGCACAGGATGGAGAAAAAGGAAAGGGCGAGTTGAAAGAGCAAGATGGAGAGAAAGGAAAAGAAGAGTTTAACCAACAGAAAAGGGAGAAAGAAATGAAAGAGTTTAAAATACAAGAAGGAGAAATAGCAATGGAAGAGTTGAAAGAACAGGTGGGAGATAAAGAAATGGAAGAGTATAAAATACAGGAAGGAGAAAAAGGAAAGGAAGAGCTGAAAGAACAGGAAGGAAAGAAAGGACAAGAAGAGTTGAAGGAACATAAAGGAGATAAGGGAAAAGAAGTGTTAAAAGAATCAGTAGgggagaaagaaaaagaagagatgAAAGTGcatgaaagagagaaaagaaaggaaGAGTTTAAAGTGCAAAAAGATATTGATCCCAAAGATTATGGTGTTGAAGGGCCAAAGAGTGATGAATTGATAGATCTTGGAGAACAAGGGAGGGTGGAGCTTGAGGAGGAAGATCTAGAGGAAGATCCAGAAGAAGATCCGGCGGAACCGCCCAAAGAAACCGAGACATTGTATGAAGAGCATATGGAATTTGAAGCCGTTGCAAAGGAGCGAAAGATTAGGAAAGAGCATGAGATATTTGTTGGTGGATTGGATCGTGAGGCTACAGAGGAAGATCTGAGAAAGGTTTTTCAAAGGATTGGGGAGGTAGTGGAAGTCAGGTTGCATAAAAATtcatcaacaaataaaaataaggtcTATGCTTTTGTGGAGTTTGCTAATAAGGAGCATGCAAAGAAAGCTTTGTCTGAAATGAAGAACCCTGTTATACATGGAAAACGATGTGGCACCTCACTTAGTGAGGATAATGACACATTATTCTTAGGAAATATTTGTAATACATGGAAAAAAGAAGCTATTAAACAGAAGCTGAAGGATTATGGTGTAGAAGGGGTTGAAAGCATTGCACTTGCACCAGATGTTCAACATGAAGGCTTGAGCCGGGGTTTTGCATTCCTTGAGTTTTCTTGTCATGCGGATGCCATGCTGGCatacaagagacttcaaaagcCTGATGTCATCTTTGGTCATGCTGAGCGAACTGCTAAGGTAGCATTTGCTGAACCGATACATGAACCAGGCTCAGAGATAATGGCACAAGTCAAGTCTGTGTTTATTAACGGTCTCCCTCTTGACTGGGATGAAGATCACGTGAGGGAGCTATTGAAATCGTACGGTGAAATTGTaacaattgttttgtcaaggAATATGTCCACGGCTAAGAGGAAGGATTATGGATTTGTCGATTTTTCCACACATGAAGCTGCTTTAGCTTGTGTTGACAGTGTAAATAAATCAGAATTGGGAGATGGGAAATCAGAGAAAAAAGTGAGTGCTAGGCTTTCAAAACCTTTGCCTAAAATGCAGGCTGTTAAAGGGGGCATGTGCGGTGACCTCCGCATTGGTCAGGCTAGGAGTGAAGCCTACCCAAGATCCGAAAGGGGTTTTGGGCGGGGGCGGGGAAGACAGCCCTTCAACAACAGGGGAAATTTCAACAGGGGCAGGGGTTTCTATCATCACGGGGGGCGCAGTCAAATTGGAAGAATGGGTTTTCGGGATGATCCTGATTTTAGTATGCATCCGGATTTTCATCAGTGGCAATTTGGTCCACAAGGAGCTATGAGGGGTGGATATTATGCAGGTAGTCGAGGTGGTGCTCCATTGGCTGGTCCATCTAGACTTTATCATGATAGAGCATGGTATGGTATCCCTGATGGAGGCCCCGTCGAGCCTCTTCCTCCAAGAAGGCCCTACTCTTCAGGTGGGCAGTTTTATGGTATCCCTGATGGAGGCCCCGGTGAGCCTTTTCCTCCAAGAAGGCCCTACTCTCCAGGTGGACAGTTTTATGGTATCCCTGATGGAGTCCCTGGTGAGCCTGTTCCTCCAAGAAGGCCCTACTCTCCAGGTGGACAGTTTGACATGCCTTTTATGGGAAGCCATGTTGATGATCCATATCTATATGATGACAATATGCGTGGAATCAAACGTCCACTTTATATGACtGACCCTGAACCTGATTACACGGGGCCCAATAGACTTCGCCCCCGATTTGATTATGCAGATCCATCTATGTTTCACGGAACTCGTTACGATGGTCTAAACTTTACTTCCCTTTTCTTTCCTACTTATCTATTGTATGTTTGTATTCTTGATAACATTTTTTGA 2847 0.4201 MRTRNADSSSKSTIPKKTPPAIKTAGESPAAKRTFPSKGRNPKKLETSPATDPDQSQEKQNTLSVKRKTPTKRRTKVVADTPNVEEQLEAEVDETTVVDNYEAAERVEEAGNVKDIDADNIGSEKEGEQRSIGLTNEREQKPMEVDEPVIEKVCELVEKGKSMEEVEPIVSQDASLSFKQPGCTIVDLNISVDDNEDYTGAKEGREELKEEELNVGERGKEELKAQDGEKGKGELKEQDGEKGKEEFNQQKREKEMKEFKIQEGEIAMEELKEQVGDKEMEEYKIQEGEKGKEELKEQEGKKGQEELKEHKGDKGKEVLKESVGEKEKEEMKVHEREKRKEEFKVQKDIDPKDYGVEGPKSDELIDLGEQGRVELEEEDLEEDPEEDPAEPPKETETLYEEHMEFEAVAKERKIRKEHEIFVGGLDREATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKVYAFVEFANKEHAKKALSEMKNPVIHGKRCGTSLSEDNDTLFLGNICNTWKKEAIKQKLKDYGVEGVESIALAPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPIHEPGSEIMAQVKSVFINGLPLDWDEDHVRELLKSYGEIVTIVLSRNMSTAKRKDYGFVDFSTHEAALACVDSVNKSELGDGKSEKKVSARLSKPLPKMQAVKGGMCGDLRIGQARSEAYPRSERGFGRGRGRQPFNNRGNFNRGRGFYHHGGRSQIGRMGFRDDPDFSMHPDFHQWQFGPQGAMRGGYYAGSRGGAPLAGPSRLYHDRAWYGIPDGGPVEPLPPRRPYSSGGQFYGIPDGGPGEPFPPRRPYSPGGQFYGIPDGVPGEPVPPRRPYSPGGQFDMPFMGSHVDDPYLYDDNMRGIKRPLYMTDPEPDYTGPNRLRPRFDYADPSMFHGTRYDGLNFTSLFFPTYLLYVCILDNIF 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03491 948 MobiDBLite consensus disorder prediction 48 64 - -
Tsu04g03491 948 MobiDBLite consensus disorder prediction 702 732 - -
Tsu04g03491 948 MobiDBLite consensus disorder prediction 1 84 - -
Tsu04g03491 948 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 596 678 IPR000504 GO:0003723
Tsu04g03491 948 MobiDBLite consensus disorder prediction 194 395 - -
Tsu04g03491 948 MobiDBLite consensus disorder prediction 800 838 - -
Tsu04g03491 948 PANTHER NUCLEOLIN-LIKE ISOFORM X1 289 754 - -
Tsu04g03491 948 PANTHER NUCLEOLIN-LIKE ISOFORM X1 867 924 - -
Tsu04g03491 948 SMART rrm1_1 597 670 IPR000504 GO:0003723
Tsu04g03491 948 SMART rrm1_1 499 576 IPR000504 GO:0003723
Tsu04g03491 948 SMART rrm1_1 419 492 IPR000504 GO:0003723
Tsu04g03491 948 MobiDBLite consensus disorder prediction 196 371 - -
Tsu04g03491 948 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 289 754 - -
Tsu04g03491 948 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 867 924 - -
Tsu04g03491 948 MobiDBLite consensus disorder prediction 372 390 - -
Tsu04g03491 948 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 498 583 IPR000504 GO:0003723
Tsu04g03491 948 Gene3D - 585 739 IPR012677 -
Tsu04g03491 948 SUPERFAMILY RNA-binding domain, RBD 419 563 IPR035979 GO:0003676
Tsu04g03491 948 Coils Coil 254 281 - -
Tsu04g03491 948 Gene3D - 497 582 IPR012677 -
Tsu04g03491 948 CDD RRM_SF 500 563 - -
Tsu04g03491 948 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 418 496 IPR000504 GO:0003723
Tsu04g03491 948 Gene3D - 368 493 IPR012677 -
Tsu04g03491 948 CDD RRM_SF 420 488 - -
Tsu04g03491 948 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 500 568 IPR000504 GO:0003723
Tsu04g03491 948 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 420 488 IPR000504 GO:0003723
Tsu04g03491 948 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 598 664 IPR000504 GO:0003723
Tsu04g03491 948 MobiDBLite consensus disorder prediction 106 147 - -
Tsu04g03491 948 SUPERFAMILY RNA-binding domain, RBD 590 691 IPR035979 GO:0003676
Tsu04g03491 948 CDD RRM_SF 598 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03491 Tsu-Chr4 44090845 44097307 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03491 419 670 Eukaryotic Initiation Factors Gene Family AT1G71770 25.556 6.78e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03491 - - gmx:100819035 1035.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03491 04 44090845 44097307 Tsu04g03491 04 44090845 44097307 ECH