Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu04g03491 | ATGAGAACTCGAAATGCTGATTCATCTTCCAAATCTACAATCCCTAAAAAGACACCGCCGGCGATAAAAACCGCCGGAGAATCTCCCGCTGCAAAGCGCACATTTCCGTCCAAAGGCAGAAACCCTAAGAAGTTGGAAACATCACCCGCAACCGATCCGGATCAATCTCAAGAGAAGCAGAACACATTATCTGTAAAGAGGAAAACACCAACCAAAAGGAGAACAAAAGTGGTTGCCGACACTCCAAATGTGGAAGAGCAATTGGAGGCTGAAGTTGATGAAACTACAGTTGTAGATAATTATGAGGCAGCAGAGAGAGTGGAAGAAGCTGGAAATGTTAAAGACATTGATGCGGATAATATTGGGAGTGAGAAAGAGGGGGAACAAAGATCTATTGGGTTAACCAATGAGAGGGAACAGAAGCCCATGGAAGTAGATGAACCTGTTATTGAAAAAGTTTGTGAATTGGTCGAAAAGGGAAAGAGCATGGAAGAGGTTGAACCAATTGTTTCTCAGGATGCTTCTCTTTCTTTTAAACAACCGGGTTGCACCATTGTGGACCTCAATATATCTGTGGATGATAATGAAGATTATACTGGTGCAAAGGAGGGAAGGGAAGAGTTGAAAGAGGAAGAGTTGAATGTGGGAGAGAGAGGAAAGGAAGAGTTGAAAGCACAGGATGGAGAAAAAGGAAAGGGCGAGTTGAAAGAGCAAGATGGAGAGAAAGGAAAAGAAGAGTTTAACCAACAGAAAAGGGAGAAAGAAATGAAAGAGTTTAAAATACAAGAAGGAGAAATAGCAATGGAAGAGTTGAAAGAACAGGTGGGAGATAAAGAAATGGAAGAGTATAAAATACAGGAAGGAGAAAAAGGAAAGGAAGAGCTGAAAGAACAGGAAGGAAAGAAAGGACAAGAAGAGTTGAAGGAACATAAAGGAGATAAGGGAAAAGAAGTGTTAAAAGAATCAGTAGgggagaaagaaaaagaagagatgAAAGTGcatgaaagagagaaaagaaaggaaGAGTTTAAAGTGCAAAAAGATATTGATCCCAAAGATTATGGTGTTGAAGGGCCAAAGAGTGATGAATTGATAGATCTTGGAGAACAAGGGAGGGTGGAGCTTGAGGAGGAAGATCTAGAGGAAGATCCAGAAGAAGATCCGGCGGAACCGCCCAAAGAAACCGAGACATTGTATGAAGAGCATATGGAATTTGAAGCCGTTGCAAAGGAGCGAAAGATTAGGAAAGAGCATGAGATATTTGTTGGTGGATTGGATCGTGAGGCTACAGAGGAAGATCTGAGAAAGGTTTTTCAAAGGATTGGGGAGGTAGTGGAAGTCAGGTTGCATAAAAATtcatcaacaaataaaaataaggtcTATGCTTTTGTGGAGTTTGCTAATAAGGAGCATGCAAAGAAAGCTTTGTCTGAAATGAAGAACCCTGTTATACATGGAAAACGATGTGGCACCTCACTTAGTGAGGATAATGACACATTATTCTTAGGAAATATTTGTAATACATGGAAAAAAGAAGCTATTAAACAGAAGCTGAAGGATTATGGTGTAGAAGGGGTTGAAAGCATTGCACTTGCACCAGATGTTCAACATGAAGGCTTGAGCCGGGGTTTTGCATTCCTTGAGTTTTCTTGTCATGCGGATGCCATGCTGGCatacaagagacttcaaaagcCTGATGTCATCTTTGGTCATGCTGAGCGAACTGCTAAGGTAGCATTTGCTGAACCGATACATGAACCAGGCTCAGAGATAATGGCACAAGTCAAGTCTGTGTTTATTAACGGTCTCCCTCTTGACTGGGATGAAGATCACGTGAGGGAGCTATTGAAATCGTACGGTGAAATTGTaacaattgttttgtcaaggAATATGTCCACGGCTAAGAGGAAGGATTATGGATTTGTCGATTTTTCCACACATGAAGCTGCTTTAGCTTGTGTTGACAGTGTAAATAAATCAGAATTGGGAGATGGGAAATCAGAGAAAAAAGTGAGTGCTAGGCTTTCAAAACCTTTGCCTAAAATGCAGGCTGTTAAAGGGGGCATGTGCGGTGACCTCCGCATTGGTCAGGCTAGGAGTGAAGCCTACCCAAGATCCGAAAGGGGTTTTGGGCGGGGGCGGGGAAGACAGCCCTTCAACAACAGGGGAAATTTCAACAGGGGCAGGGGTTTCTATCATCACGGGGGGCGCAGTCAAATTGGAAGAATGGGTTTTCGGGATGATCCTGATTTTAGTATGCATCCGGATTTTCATCAGTGGCAATTTGGTCCACAAGGAGCTATGAGGGGTGGATATTATGCAGGTAGTCGAGGTGGTGCTCCATTGGCTGGTCCATCTAGACTTTATCATGATAGAGCATGGTATGGTATCCCTGATGGAGGCCCCGTCGAGCCTCTTCCTCCAAGAAGGCCCTACTCTTCAGGTGGGCAGTTTTATGGTATCCCTGATGGAGGCCCCGGTGAGCCTTTTCCTCCAAGAAGGCCCTACTCTCCAGGTGGACAGTTTTATGGTATCCCTGATGGAGTCCCTGGTGAGCCTGTTCCTCCAAGAAGGCCCTACTCTCCAGGTGGACAGTTTGACATGCCTTTTATGGGAAGCCATGTTGATGATCCATATCTATATGATGACAATATGCGTGGAATCAAACGTCCACTTTATATGACtGACCCTGAACCTGATTACACGGGGCCCAATAGACTTCGCCCCCGATTTGATTATGCAGATCCATCTATGTTTCACGGAACTCGTTACGATGGTCTAAACTTTACTTCCCTTTTCTTTCCTACTTATCTATTGTATGTTTGTATTCTTGATAACATTTTTTGA | 2847 | 0.4201 | MRTRNADSSSKSTIPKKTPPAIKTAGESPAAKRTFPSKGRNPKKLETSPATDPDQSQEKQNTLSVKRKTPTKRRTKVVADTPNVEEQLEAEVDETTVVDNYEAAERVEEAGNVKDIDADNIGSEKEGEQRSIGLTNEREQKPMEVDEPVIEKVCELVEKGKSMEEVEPIVSQDASLSFKQPGCTIVDLNISVDDNEDYTGAKEGREELKEEELNVGERGKEELKAQDGEKGKGELKEQDGEKGKEEFNQQKREKEMKEFKIQEGEIAMEELKEQVGDKEMEEYKIQEGEKGKEELKEQEGKKGQEELKEHKGDKGKEVLKESVGEKEKEEMKVHEREKRKEEFKVQKDIDPKDYGVEGPKSDELIDLGEQGRVELEEEDLEEDPEEDPAEPPKETETLYEEHMEFEAVAKERKIRKEHEIFVGGLDREATEEDLRKVFQRIGEVVEVRLHKNSSTNKNKVYAFVEFANKEHAKKALSEMKNPVIHGKRCGTSLSEDNDTLFLGNICNTWKKEAIKQKLKDYGVEGVESIALAPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPIHEPGSEIMAQVKSVFINGLPLDWDEDHVRELLKSYGEIVTIVLSRNMSTAKRKDYGFVDFSTHEAALACVDSVNKSELGDGKSEKKVSARLSKPLPKMQAVKGGMCGDLRIGQARSEAYPRSERGFGRGRGRQPFNNRGNFNRGRGFYHHGGRSQIGRMGFRDDPDFSMHPDFHQWQFGPQGAMRGGYYAGSRGGAPLAGPSRLYHDRAWYGIPDGGPVEPLPPRRPYSSGGQFYGIPDGGPGEPFPPRRPYSPGGQFYGIPDGVPGEPVPPRRPYSPGGQFDMPFMGSHVDDPYLYDDNMRGIKRPLYMTDPEPDYTGPNRLRPRFDYADPSMFHGTRYDGLNFTSLFFPTYLLYVCILDNIF | 948 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu04g03491 | 948 | MobiDBLite | consensus disorder prediction | 48 | 64 | - | - | |
Tsu04g03491 | 948 | MobiDBLite | consensus disorder prediction | 702 | 732 | - | - | |
Tsu04g03491 | 948 | MobiDBLite | consensus disorder prediction | 1 | 84 | - | - | |
Tsu04g03491 | 948 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 596 | 678 | IPR000504 | GO:0003723 | |
Tsu04g03491 | 948 | MobiDBLite | consensus disorder prediction | 194 | 395 | - | - | |
Tsu04g03491 | 948 | MobiDBLite | consensus disorder prediction | 800 | 838 | - | - | |
Tsu04g03491 | 948 | PANTHER | NUCLEOLIN-LIKE ISOFORM X1 | 289 | 754 | - | - | |
Tsu04g03491 | 948 | PANTHER | NUCLEOLIN-LIKE ISOFORM X1 | 867 | 924 | - | - | |
Tsu04g03491 | 948 | SMART | rrm1_1 | 597 | 670 | IPR000504 | GO:0003723 | |
Tsu04g03491 | 948 | SMART | rrm1_1 | 499 | 576 | IPR000504 | GO:0003723 | |
Tsu04g03491 | 948 | SMART | rrm1_1 | 419 | 492 | IPR000504 | GO:0003723 | |
Tsu04g03491 | 948 | MobiDBLite | consensus disorder prediction | 196 | 371 | - | - | |
Tsu04g03491 | 948 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G | 289 | 754 | - | - | |
Tsu04g03491 | 948 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G | 867 | 924 | - | - | |
Tsu04g03491 | 948 | MobiDBLite | consensus disorder prediction | 372 | 390 | - | - | |
Tsu04g03491 | 948 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 498 | 583 | IPR000504 | GO:0003723 | |
Tsu04g03491 | 948 | Gene3D | - | 585 | 739 | IPR012677 | - | |
Tsu04g03491 | 948 | SUPERFAMILY | RNA-binding domain, RBD | 419 | 563 | IPR035979 | GO:0003676 | |
Tsu04g03491 | 948 | Coils | Coil | 254 | 281 | - | - | |
Tsu04g03491 | 948 | Gene3D | - | 497 | 582 | IPR012677 | - | |
Tsu04g03491 | 948 | CDD | RRM_SF | 500 | 563 | - | - | |
Tsu04g03491 | 948 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 418 | 496 | IPR000504 | GO:0003723 | |
Tsu04g03491 | 948 | Gene3D | - | 368 | 493 | IPR012677 | - | |
Tsu04g03491 | 948 | CDD | RRM_SF | 420 | 488 | - | - | |
Tsu04g03491 | 948 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 500 | 568 | IPR000504 | GO:0003723 | |
Tsu04g03491 | 948 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 420 | 488 | IPR000504 | GO:0003723 | |
Tsu04g03491 | 948 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 598 | 664 | IPR000504 | GO:0003723 | |
Tsu04g03491 | 948 | MobiDBLite | consensus disorder prediction | 106 | 147 | - | - | |
Tsu04g03491 | 948 | SUPERFAMILY | RNA-binding domain, RBD | 590 | 691 | IPR035979 | GO:0003676 | |
Tsu04g03491 | 948 | CDD | RRM_SF | 598 | 666 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu04g03491 | Tsu-Chr4 | 44090845 | 44097307 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu04g03491 | 419 | 670 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 25.556 | 6.78e-17 | 83.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu04g03491 | - | - | gmx:100819035 | 1035.4 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Tsu04g03491 | 04 | 44090845 | 44097307 | Tsu04g03491 | 04 | 44090845 | 44097307 | ECH |