Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03490 ATGATGGAGTCATGTGTCCCACCTGGATTTCGGTTTCATCCAACTGATGTAGAACTTGTTGGTTATTATCTTAGAAAGAAAGTAGCTTCTCACAAGATTGATCTTGATGTTATTAAAGAGATCGACTTATATCGTATCGAACCATGGGATCTTCAAGGGAGATGCAGAATTGGGAATGAGGAGCaacatgaattttatttttttagtcacAAAGACAAGAAATATCCAACGGGGACAAGAACAAACAGAGCTACAATGGCAGGGTTTTGGAAAGCAACAGGAAGAGATAAGTCGGTGTATGAAAGAACAAAACTGATTGGAATGAGAAAGACACTTGTTTTCTACAAAGGAAGAGCTCCTAATGGACACAAAACTGATTGGATCATGCATGAGTATAGGCTTCAAACAATAGAAAATGCACCTCCACAGGAGGAAGGTTGGGTTGTATGCAAAGCAttcaagaaaaaaatcaatgtcCAAACAAAGACTAATGAAAGATGGGATCCAAATTACTTATATGATCAACAAACAAGTGGCATCATCTCAAAGGTAGACCCTTTTCATGACCACACCTTAGGTCAACCTCAGAGAATTCCACCTCAAAATTTCATGTACAAACAAGAGATAGAATCAGATACCATATTAAGCTTCATGCATTCAGAACATTTGTTACCTCTTCCTCAGCTAGAGAGTCAATCTATAGCGAAGAGACAAAACACAATGTCAATAATATCTGAAAATAACATTAACTATAATGATTTTCAAAATGGATTATTGTCCAACATTAACAAAACTGAGAAAGTGACTGATTGGAGGGCTTTTGACAAGTTTGTGGCTTCTCAATTGAGTCAAGAAGATCATAGGCATGACACAAGCTCAGATATGTCATTGTTGCTACTTCAAAGTAGTAGAGATGAAGAGAACAAGTTAAGCTCATTTTTAAGTACAAGCTTAGATTGTGATGTTGGGATATGTGtatttgaacattaa 990 0.3515 MMESCVPPGFRFHPTDVELVGYYLRKKVASHKIDLDVIKEIDLYRIEPWDLQGRCRIGNEEQHEFYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKSVYERTKLIGMRKTLVFYKGRAPNGHKTDWIMHEYRLQTIENAPPQEEGWVVCKAFKKKINVQTKTNERWDPNYLYDQQTSGIISKVDPFHDHTLGQPQRIPPQNFMYKQEIESDTILSFMHSEHLLPLPQLESQSIAKRQNTMSIISENNINYNDFQNGLLSNINKTEKVTDWRAFDKFVASQLSQEDHRHDTSSDMSLLLLQSSRDEENKLSSFLSTSLDCDVGICVFEH 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03490 329 Pfam No apical meristem (NAM) protein 7 134 IPR003441 GO:0003677|GO:0006355
Tsu04g03490 329 PANTHER NAC DOMAIN-CONTAINING PROTEIN 76 4 301 - -
Tsu04g03490 329 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Tsu04g03490 329 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 301 - -
Tsu04g03490 329 ProSiteProfiles NAC domain profile. 6 155 IPR003441 GO:0003677|GO:0006355
Tsu04g03490 329 SUPERFAMILY NAC domain 3 155 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03490 Tsu-Chr4 44083735 44088825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03490 2 329 NAC Transcription Factor Family AT2G18060 56.831 3.81e-132 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu04g03490 NAM 1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03490 - - aprc:113869508 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03490 04 44083735 44088825 Tsu04g03490 04 44083735 44088825 ECH
Tsu05g00815 05 6974084 6976996 Tsu04g03490 04 44083735 44088825 PCT