Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03480 ATGGATTTACTTCATAAAGCAAAACTTACACTAGAACCATTTCAAACAACTCTATTCTTGATTTTCCCACTCACTTTTGTTCTACTACTAAATTTAGTATCCAAAACTCGAAAAAATGCACCATATCCACCAGGACCAAAAGGTTTACCCTTAATAGGCAACATGAACATGATGGACAAACTCACACATAGAGGTTTAGCAAATTTAGCAAAACTATACGGCGGCGTTTTGCACCTCCGTATGGGATTCATCCACATGGTAGCAATTTCAAATGCGGAAGCCGCACGTGAAGTGTTACAATTACATGACAACATATTCTCCAATCGGCCGGCAACAATAGCCATAAGTTATCTAACTTATGACCGTGCTGACATGGCATTTGCTCACTATGGTCCCTTTTGGCGACAAATGCGGAAACTTTGTGTCATGAAACTCTTTAGCCGCAAACGTGCAGAGTCCTGGCAATCTGTTAGAGATGAAGTTGATGTCGTTATCACCAACGTTAATAACAACGTAGGAAAGCCGGTTAACGTTGGtgatttggtttttaatttaacCAAAAACATTATCTACCGCGCAGCTTTTGGGTCGAGTTCAAAAGAAGGACAAGATGAGTTTATTTCGATACTTCAAGAGTTTTCGAAATTGTTTGGAGCTTTTAATATTGCGgattttgttccttttttgaGAGGGGTTGATCCTCAAGGTTTTAATGCTAGGCTTGTTAAGGCTAGAGGTGCTTTGGATGgttttattgataaaattttTGATGAACAtttggagaagaagaggaaTATGAGTGATGATTGTGGTGATGAAGATAGTGATATGGTTGATGAATTATTGGCTTTTTATTGTGATGATGATAAAGTGAGCAATGAATCGGATGATCTTCAGAACTCCATCAAACTCACTAGGGATAACATCAAAGCCATCATCATGGATGTAATGTTTGGAGGAACAGAAACGGTAGCATCAGCAATGGAATGGGTTATATCGGAGCTAATGAGAAATCCGCAAGATCTAAAGCGCGTGCAAGAAGAACTTGCCACTGTGGTTGGCTTAGACCGGCGGGTTGAGGAATCAGACATAGAAAAACTCACATATCTAAAATGTGTTGTCAAAGAGACATTGCGTCTTCACCCGCCGATTCCCCTACTCCTCCATGAAACGGCAGAAGATGCGAAAATTCGTGGTTATTTTGTCCCAAAGGGCTCGCGTGTGATGATAAATGTGTGGGCTATAGGCAGAGACAAAAACTCGTGGGAAGATCCGGAAGAATTTAAGCCTTCGCGGTTTCTTAATTCAAGCGCACCTGATTTTAAAGGAAGTAATTTTGAGTTTATTCCGTTCGGGTCAGGTCGAAGGTCTTGCCCTGGAATGCAATTGGGTTTGTATGCATTAGACCTGGCTCTGGCCCATTTACTTCATTGCTTTACATGGAATTTACCTAATGGGATGAAGCCGAGTGAAATGGATATGAATGATGTTTTTGGACTCACAGCTCCTAGAGCGAGTCGACTCGTTGCTGTTCCAGCTAAACGTGTTGTATGCCCTCTCTGA 1563 0.3986 MDLLHKAKLTLEPFQTTLFLIFPLTFVLLLNLVSKTRKNAPYPPGPKGLPLIGNMNMMDKLTHRGLANLAKLYGGVLHLRMGFIHMVAISNAEAAREVLQLHDNIFSNRPATIAISYLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRAESWQSVRDEVDVVITNVNNNVGKPVNVGDLVFNLTKNIIYRAAFGSSSKEGQDEFISILQEFSKLFGAFNIADFVPFLRGVDPQGFNARLVKARGALDGFIDKIFDEHLEKKRNMSDDCGDEDSDMVDELLAFYCDDDKVSNESDDLQNSIKLTRDNIKAIIMDVMFGGTETVASAMEWVISELMRNPQDLKRVQEELATVVGLDRRVEESDIEKLTYLKCVVKETLRLHPPIPLLLHETAEDAKIRGYFVPKGSRVMINVWAIGRDKNSWEDPEEFKPSRFLNSSAPDFKGSNFEFIPFGSGRRSCPGMQLGLYALDLALAHLLHCFTWNLPNGMKPSEMDMNDVFGLTAPRASRLVAVPAKRVVCPL 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03480 520 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 451 460 IPR017972 GO:0005506|GO:0016705
Tsu04g03480 520 Pfam Cytochrome P450 43 504 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g03480 520 PRINTS E-class P450 group I signature 308 325 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g03480 520 PRINTS E-class P450 group I signature 94 115 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g03480 520 PRINTS E-class P450 group I signature 328 354 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g03480 520 PRINTS E-class P450 group I signature 458 481 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g03480 520 PRINTS E-class P450 group I signature 448 458 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g03480 520 PRINTS E-class P450 group I signature 70 89 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g03480 520 PRINTS E-class P450 group I signature 185 203 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g03480 520 PRINTS E-class P450 group I signature 371 389 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g03480 520 PRINTS E-class P450 group I signature 411 435 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g03480 520 SUPERFAMILY Cytochrome P450 43 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g03480 520 PRINTS P450 superfamily signature 449 458 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g03480 520 PRINTS P450 superfamily signature 319 336 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g03480 520 PRINTS P450 superfamily signature 458 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g03480 520 PRINTS P450 superfamily signature 372 383 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g03480 520 PANTHER CYTOCHROME P450 84A1-RELATED 9 520 - -
Tsu04g03480 520 Gene3D Cytochrome P450 35 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu04g03480 520 PANTHER CYTOCHROME P450 FAMILY FERULATE HYDROXYLASE 9 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03480 Tsu-Chr4 43980333 43985024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03480 50 520 Monolignol Biosynthesis Gene Families AT4G36220 75.264 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03480 K09755 - gmx:100807448 814.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00801 05 6811391 6815180 Tsu04g03480 04 43980333 43985024 ECH
Tsu04g03480 04 43980333 43985024 Tsu04g03480 04 43980333 43985024 ECH
Tsu05g00801 05 6811391 6815180 Tsu04g03480 04 43980333 43985024 PCT