Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03477 ATGGAATGTGTCAAAACAGAAGCAGctttaaaaaacaatttcacCATAACCACGACCATGAAATTCACTCCACAAACGTTGTTAGTAGAATTATCTTCTTCTAATGTCCAAGACATAGCTCCTATTGATGATTTCTTTGTCGATGATTTTCTTAACTTTTCcaacgaagaagaagaacaagaacatCCACAAAACATTctagaagaaaaacaacaaaaccatacacctcaacaaaatacCCTAATTCAAACCGAAATTTCCAACCCATTAATCAACGACCATTTTGCTTCATTACCCACTTCCGAACTCACCGTTCCGgTAGAAGAAGCTGCTAATTTAGAATGGTTATCATATTTCGTTGAAGATTCGTTCTCAGAATTCTCCATAACAGAAAATCTACAAGAAAAAGCTTCTGAACAAAAACCCACGTTTTCAACGCCGTGTTTCAAAACTCCGGTACCGGCGAAAGCAAGAAGCAAAAGAACAAGAACCGGAGTTCGTGTATGGCCAGTTTCATTAATCGATTCATCTTCAACTTCTAGCTCAACTACCCTTTCTTCCACATCCTCACACCATGAAGAATGTTCGAAACCGCCggagaaaaagaagaggatGAGTTTACATGACGGAGAAGGGAGAGGTGTGCCGCGACGGTGTAGTCATTGTGGTGTTACGAAAACACCTCAGTGGCGAACCGGACCGGTTGGACCGAAAACACTTTGTAATGCTTGTGGAGTTCGTTATAAGTCGGGTCGGTTGTTACCCGAATATAGGCCCGCTTGTAGCCCGACTTTTTCGAGTGAGTTGCATTCTAACAGTCACCGGAAAGTTCTTGAGATGCGGCGGAAGAAGGAGGATGTTCCTGGTTCGCCACCGGTTGTTCCCGGTTTTTGA 894 0.3848 MECVKTEAALKNNFTITTTMKFTPQTLLVELSSSNVQDIAPIDDFFVDDFLNFSNEEEEQEHPQNILEEKQQNHTPQQNTLIQTEISNPLINDHFASLPTSELTVPVEEAANLEWLSYFVEDSFSEFSITENLQEKASEQKPTFSTPCFKTPVPAKARSKRTRTGVRVWPVSLIDSSSTSSSTTLSSTSSHHEECSKPPEKKKRMSLHDGEGRGVPRRCSHCGVTKTPQWRTGPVGPKTLCNACGVRYKSGRLLPEYRPACSPTFSSELHSNSHRKVLEMRRKKEDVPGSPPVVPGF 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03477 297 Gene3D - 211 286 IPR013088 GO:0006355|GO:0008270
Tsu04g03477 297 PANTHER GATA TRANSCRIPTION FACTOR 1 285 - -
Tsu04g03477 297 SMART GATA_3 213 267 IPR000679 GO:0006355|GO:0043565
Tsu04g03477 297 MobiDBLite consensus disorder prediction 176 192 - -
Tsu04g03477 297 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 214 275 - -
Tsu04g03477 297 MobiDBLite consensus disorder prediction 193 216 - -
Tsu04g03477 297 PIRSF Txn_fac_GATA_plant 8 290 IPR016679 GO:0003677|GO:0005634|GO:0045893
Tsu04g03477 297 ProSiteProfiles GATA-type zinc finger domain profile. 213 249 IPR000679 GO:0006355|GO:0043565
Tsu04g03477 297 Pfam GATA zinc finger 219 253 IPR000679 GO:0006355|GO:0043565
Tsu04g03477 297 ProSitePatterns GATA-type zinc finger domain. 219 244 IPR000679 GO:0006355|GO:0043565
Tsu04g03477 297 CDD ZnF_GATA 218 266 IPR000679 GO:0006355|GO:0043565
Tsu04g03477 297 MobiDBLite consensus disorder prediction 138 161 - -
Tsu04g03477 297 MobiDBLite consensus disorder prediction 176 218 - -
Tsu04g03477 297 PANTHER GATA TRANSCRIPTION FACTOR 1 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03477 Tsu-Chr4 43919630 43921122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03477 7 297 C2C2-Gata Transcription Factor Family AT5G66320 43.402 2.51e-67 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tsu04g03477 GATA 1.7e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03477 - - cam:101512459 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00798 05 6761649 6763292 Tsu04g03477 04 43919630 43921122 ECH
Tsu04g03477 04 43919630 43921122 Tsu04g03477 04 43919630 43921122 ECH
Tsu05g00798 05 6761649 6763292 Tsu04g03477 04 43919630 43921122 PCT