Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03465 atggCTGGTTTATTCTCGTTAGGAGGTGGAGGTGGTGGAGGAAGAGGAGGAGAATCATCAAATCAACAAGGTCAAATTCCTCCAGAGACTCTACTTTGGTACAGTAAAAACGACGACGTTTCATCTTACAGAGGAAATTTAGAATTATggaaccaacaacaacaacatcatcagcATCACCATccgcaacaacaacaacaacaacaagatgATATGCATGGTGTAGCGAGGCCATTTTTTTCTCGAGATCTCTATGGATTAGGAGTGGGACCAAGTAGGGTTTCATCAGATGATCAGTCGTCACCGAGATCGGCTGCTGCCGCTTTTAATATGACAGTAAGGTCATCATCTGGTGGTGGTATTGAAGGTATAAGTTGTCAAGATTGTGGTAACCAAGCTAAAAAAGATTGTACTCATATGAGATGTAGAACTTGTTGTAAGAGTCGTGGTTTTCATTGTCAAACTCATGTTAAAAGTACTTGGGTACCTGCTTCAAGACGCCGTGAACGTCAACAACAATTAACTTCAACATCTTCtttacaacaacaacaacagcagaGAGATATTTCTAAACGACCTAGAGATGCTCTTGTCCCTACTAGAAATTTCCCTTCAGggTTAGAGGAAGCAAATTTTCCAGCTGTGGTTAGCTCTCCAGCAGAGTTTAGGTGTGTAAGGGTTAGCTCAATTGATGATGCAGATGATAGATATGCATATCAAACGGCTGTAAACATTGGAGGGCATTTGTTCAAAGGAATTCTCTATGACTTTGGTCCAGAAACTAGTagcaacaataacaacaataataataataattataatagtaGTAATTACATGATTGGGGAGACTTCGGGTGGAAGTGGTGTTGGCGTTGCTCAGCCGTTGAACTTAATCACCGACTCTGATGTCACTGTTGTTGCCTCTTCTGGGGCACTTGTTGATCCTTCTTCCTTGTATTCGGCTGCTGCCCCGATTAACGCCTTCATGACGGCTAGTGGTACGCAATTCTTCCCTCGCCCAAGAtcttga 1029 0.3771 MAGLFSLGGGGGGGRGGESSNQQGQIPPETLLWYSKNDDVSSYRGNLELWNQQQQHHQHHHPQQQQQQQDDMHGVARPFFSRDLYGLGVGPSRVSSDDQSSPRSAAAAFNMTVRSSSGGGIEGISCQDCGNQAKKDCTHMRCRTCCKSRGFHCQTHVKSTWVPASRRRERQQQLTSTSSLQQQQQQRDISKRPRDALVPTRNFPSGLEEANFPAVVSSPAEFRCVRVSSIDDADDRYAYQTAVNIGGHLFKGILYDFGPETSSNNNNNNNNNYNSSNYMIGETSGGSGVGVAQPLNLITDSDVTVVASSGALVDPSSLYSAAAPINAFMTASGTQFFPRPRS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03465 342 Pfam Domain of unknown function (DUF702) 123 260 - -
Tsu04g03465 342 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 125 167 IPR006510 -
Tsu04g03465 342 MobiDBLite consensus disorder prediction 163 203 - -
Tsu04g03465 342 MobiDBLite consensus disorder prediction 163 187 - -
Tsu04g03465 342 MobiDBLite consensus disorder prediction 1 26 - -
Tsu04g03465 342 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 212 259 IPR006511 -
Tsu04g03465 342 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 340 IPR007818 GO:0003700|GO:0006355
Tsu04g03465 342 PANTHER PROTEIN SHORT INTERNODES 1 340 - -
Tsu04g03465 342 MobiDBLite consensus disorder prediction 52 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03465 Tsu-Chr4 43781242 43783072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03465 45 342 C2H2 Transcription Factor Family AT3G51060 48.338 1.00e-74 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Tsu04g03465 DUF702 9.5e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03465 - - gmx:100781981 338.191