Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03460 ATGGCAGCAACAAAATCTATAATAGGGTATAAATTTGACCCAACTGATGAAGAACTTGTAAATTACTACttgaaacacaaatttttgGTCAGCAACATAGCTCATATTCGTCTTCTCAACTTTGCACCATCGGAATTACCAGCAAAGTTGAAGATGAAATCAGATGAGAAAGAAGGGTTTTTCTTTACTTGTCTtgatttgatgaagatgaacaaAATTACAAGGTGTAATAGAAAAGCAAAGGGTGGTTATTGGAAGATTAGTAGAAAAAGCCGTATAATCAAGAAAAAAGGAACAATGTTATTGAGCAAGCGGAAAAAACTTCAACAAATTTCATCTTCCTGGCTGTCTCCTACCATGGATCAGGATGAACTATTGTTTTCGAGTTCTGTGGAGCGAGAAGGATGGAATACTGTCCTGGATGGAATCCTGTTGGATTTGACCGTAGACACCTTTAAACAACGTGGAGTCTTCTTGGGATGGAAAATGGATAAGCTACCATTAAAGTGTCTCAGAGGTTGGGAACAAATCACCGAACATTTCAACAAACAATGTAGTCATCATGGTTCGTATTTCCAACAACAACGCTTGAAAACTGCCACACAATTGGGCTGTAGACTTCTTTGTTTGAAAAAACAAGCTGAGAAGCTAAAGTTCAAGTTGGGAGGATCTCCACTGAAGGAATCATTGACATTCTTGTTTAAGAAATATAAGGTGACTATCCCATACTATATCACCGAAGGCGGGGAGGACGAAAGGCCCAGGTCTAGAAGCCCTACAAGAATCACTTCTAGTGGGTCTGGTTCTAGTGGGCAATTTACACTGCATCGCAGTGCATCCTTTGCTACTCCTGCTGCTGGCAGTACATCGTATGCAAGTCCGACCTGTGATACTCCTTCTCCTGCTCAGTGTGAGGAAGTGAATAAGGTTTTGATTGGATTGCAAATCGATGCCATCCCTGACATTGTTGGGGCTATTACTTCCAAGGAAGTGAGAGGGTTGCTATATAGTCCTGTATGCCGGTTGACATTTGATCATGTTCTATTCCATTCAGGTCCGCTTCGTTAG 1068 0.3989 MAATKSIIGYKFDPTDEELVNYYLKHKFLVSNIAHIRLLNFAPSELPAKLKMKSDEKEGFFFTCLDLMKMNKITRCNRKAKGGYWKISRKSRIIKKKGTMLLSKRKKLQQISSSWLSPTMDQDELLFSSSVEREGWNTVLDGILLDLTVDTFKQRGVFLGWKMDKLPLKCLRGWEQITEHFNKQCSHHGSYFQQQRLKTATQLGCRLLCLKKQAEKLKFKLGGSPLKESLTFLFKKYKVTIPYYITEGGEDERPRSRSPTRITSSGSGSSGQFTLHRSASFATPAAGSTSYASPTCDTPSPAQCEEVNKVLIGLQIDAIPDIVGAITSKEVRGLLYSPVCRLTFDHVLFHSGPLR 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03460 355 Gene3D NAC domain 15 112 IPR036093 GO:0003677|GO:0006355
Tsu04g03460 355 SUPERFAMILY NAC domain 7 106 IPR036093 GO:0003677|GO:0006355
Tsu04g03460 355 MobiDBLite consensus disorder prediction 248 273 - -
Tsu04g03460 355 Pfam No apical meristem (NAM) protein 9 106 IPR003441 GO:0003677|GO:0006355
Tsu04g03460 355 PANTHER NAC DOMAIN CONTAINING PROTEIN 49 8 100 - -
Tsu04g03460 355 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 8 100 - -
Tsu04g03460 355 MobiDBLite consensus disorder prediction 259 273 - -
Tsu04g03460 355 ProSiteProfiles NAC domain profile. 6 146 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03460 Tsu-Chr4 43744952 43748638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03460 9 107 NAC Transcription Factor Family AT3G15170 45.192 4.26e-14 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu04g03460 NAM 3.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03460 - - mtr:MTR_8g023880 87.4261