Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03417 ATGTCATTCAAAAGTATAGTACGTGAGCTCAAGGGGATAAAAAATGGTATAGGTAGCATATCAAAACGGAGTTTTGAAAGCAAGCATTGGCTCTATCGTTCAAAGTCACATGTTGCTCCGGATGTAACTCCAATTGAACCTATTCAACAGGGACAGTGGGCAAGTCTACCACCTGAATTACTTTTGGATATAATCAGGAGGGTTGAAGAGAGTGAGACATCTTGGCCTGCCCGTgctgttgttgttttttgtgcTTCGGTATGTAAATCATGGAGGTCCGTCACAAAAGAGATCATCAAGACACCTCAGCAATGCGGAAGGATAACATTTCCTATTTCATTGAAGCAGCCTGGTCCCCGTGATTATCCAATACAGTGCTTTATTAGGAGGAACCGAGAAACATCTACATTCACGTTGTACTTAGGTTTGGTGCCATCGGAGCATGAGAATAAGTTGTTATTAGCCGCCAAAAAGGTAAGAAGGGCCACAGGCACCGACTTTATCATATCCTTGGCTGCAAATGATTTTTCTCGAGCCAGCAACAAATATGTTGGTAAACTAAGGTCTAATTTTTGGGGAACCAAGTTTGCTATATACGATAGTCAACCTCCACATGACGCTGCAGTTCAGCCAAATCGTCGACCAAGTAGGAGATCTCATTCTAAGCAGGTCTCACCAAGAGTTCCAGCATGTAGCCATCTTGTTAGCACAATTTCCTATGAGCTGAATGCTCTCTGGACTAGAGGGCCAAGAAGAGTGCACTGCACCATGAACTCTATACCTATCTCAGCTATTCAGGAAGGGGGAAATGCCCCAACTCCAACATCCTTACCCCAAATATTCAGTGAACCTTTTCCTCTCTCACCGGCACTGAAAGAAAAAAGTCCAATGCCCGATTCGTACTCTGGCAGCCTATCAGAGCTACCAGAACTAAGCCAAGGCTCAACTGATCCCTTGATACTCAAAAACAAGTCACCGAGATGGCATGAACAGCTCCAGTGTTGGTGCCTAAACTTCATGGGTCGTGTTACAGTTGCATCTGTAAAGAACTTTCAACTTGTAGCTTCTGTTGATCCGTCTCATAATGTTTCGCCTGCGGAGCAAGAAAGGGTAATCTTGCAGTTTGGAAAGATTGGGAAAGATATATTCACAATGGACTACTCATACCCACTCTCTGCCTTCCAAGCCTTTGCCATCTGCTTAACAAGCTTTGATACTAAACCCGCCTGTGAATGA 1236 0.4345 MSFKSIVRELKGIKNGIGSISKRSFESKHWLYRSKSHVAPDVTPIEPIQQGQWASLPPELLLDIIRRVEESETSWPARAVVVFCASVCKSWRSVTKEIIKTPQQCGRITFPISLKQPGPRDYPIQCFIRRNRETSTFTLYLGLVPSEHENKLLLAAKKVRRATGTDFIISLAANDFSRASNKYVGKLRSNFWGTKFAIYDSQPPHDAAVQPNRRPSRRSHSKQVSPRVPACSHLVSTISYELNALWTRGPRRVHCTMNSIPISAIQEGGNAPTPTSLPQIFSEPFPLSPALKEKSPMPDSYSGSLSELPELSQGSTDPLILKNKSPRWHEQLQCWCLNFMGRVTVASVKNFQLVASVDPSHNVSPAEQERVILQFGKIGKDIFTMDYSYPLSAFQAFAICLTSFDTKPACE 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03417 411 Pfam F-box domain 53 98 IPR001810 GO:0005515
Tsu04g03417 411 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 411 - -
Tsu04g03417 411 PRINTS Tubby superfamily signature 167 183 IPR000007 -
Tsu04g03417 411 PRINTS Tubby superfamily signature 321 338 IPR000007 -
Tsu04g03417 411 PRINTS Tubby superfamily signature 368 387 IPR000007 -
Tsu04g03417 411 PRINTS Tubby superfamily signature 389 411 IPR000007 -
Tsu04g03417 411 PRINTS Tubby superfamily signature 339 355 IPR000007 -
Tsu04g03417 411 PRINTS Tubby superfamily signature 232 259 IPR000007 -
Tsu04g03417 411 PRINTS Tubby superfamily signature 183 207 IPR000007 -
Tsu04g03417 411 SUPERFAMILY Tubby C-terminal domain-like 102 411 IPR025659 -
Tsu04g03417 411 ProSitePatterns Tub family signature 2. 396 411 IPR018066 -
Tsu04g03417 411 Pfam Tub family 114 406 IPR000007 -
Tsu04g03417 411 Gene3D - 46 101 - -
Tsu04g03417 411 Gene3D Tubby Protein; Chain A 111 411 IPR025659 -
Tsu04g03417 411 SUPERFAMILY F-box domain 48 97 IPR036047 GO:0005515
Tsu04g03417 411 PANTHER TUBBY-RELATED 1 411 - -
Tsu04g03417 411 MobiDBLite consensus disorder prediction 203 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03417 Tsu-Chr4 43389551 43392586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03417 1 411 TUB Transcription Factor Family AT2G18280 62.169 3.82e-178 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Tsu04g03417 Tub 5.5e-102 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03417 K19600 - gmx:100805380 677.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03417 04 43389551 43392586 Tsu04g03417 04 43389551 43392586 ECH
Tsu05g00755 05 6359582 6363103 Tsu04g03417 04 43389551 43392586 ECH
Tsu05g00755 05 6359582 6363103 Tsu04g03417 04 43389551 43392586 PCT