Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03415 ATGAGAGAATTGCTCCAGCAAGGTCCTTCAACCTTGGATAACGATTCAAAAGAAAACTCAGATGTCAAATCTCTTCAGTTTGCGGCGGCAAGACTTAATATTACATCCGCAACATCCGTCGTAATAGAAAAAAGATCTATTGTGAAGTTACTACAAAAAGTTGGACCAgaagaggaaaataaaaagGCGATCTTGAAAAATCTGTTGTATCTTGTGAGAAAGTATGGAAACTTATTAAATACAGGAGAACAAGCGAAGGACTATTCTCATCATGAAGAACCAGCAGCAACTGAGAACTCTGGCCGTGATTCTTTACGCACCGATCATGTGAAGTTGGGGCCGTATTTGAACCATGGTCAGTATGGAACACGTGTCAGCGAGTTGAGTAGAGTTCCACCTCCGCAGGAATACACTTGTCCGATATCTTTTAGGTTGATGTATGATCCTGTTGTTATTGCTTCAGGAGAAACATACGAAAGGATGTGGATACAGAAATATTTTGATGAGGGTCATGTTATATGCCCGAAAACTAAAAAGAAACTGCCGCATATGGCCATGACCCCTAACGTTGCTTTAAAGAAAGTAATATCAAACTGGTGCAAAACTAATGGAGTCTCGATTCCTAACCCAAGTAGGCAGGCAGAAGATATTCGCTTGTGGGAAGATTCCATCGCTTCCATTAGGAGTTTTGGAAGTTCCATGAATGGTTTGAACTTGCCAATGGATCTTAGTAACATTTCACTTGGATCGTTAGATAACAGTTATAATTCAGATTCCTCACTTGTGAAGGCTAGTCATGGCTTAAATTCGATGTTGATCAACACCAGAAATGGTTCTCACGGGCATCAATCTCATTCACAGATACATGACACATATCTGGTGCCCTTGTCTAAACTTCACGATCGTCAATGGGATTCACAATGCCAAGTCGTCGAAGATATGAAAAGAGGTTTCAAATGCAATAACCAAGCTTTTGGCTCCGTGTCGTCAGAGAATTTCATTGACCCACTTGTGAGGTTTCTGAGCACTGCATATGATAAGCATGACACAAAAGCTCTTAGAAGTGGAAGTCAGTTGCTCTTGGAATTTACAAAGTACTGCAGAAATTGTGTGACAAACTTAAGTGAAGATACATGCAGTGTGTTGGCAAGTCTCCTAGAGTCAGACGTGATTGGAGAAGCTCTTGCCATACTGGAAACATTGTCGAACCAGTGGTCCAATAAAGCTGACGTTGCAGCTTCCAGTGCACTAACCTCTATTTCAAAGATCCTTGATTCTGGTCACAGAGAGTACCAACACAAAGCTATTAGAATAATGTGCAATTTTTCATCCAATAGCGAACTTTGTTCTTTCATGGTGTCTCTCGATTGCATCCCAAAAATACTACCATTTTTCGAAGACAAATCCCTTTGGAGAGACTGTATATGTATATTGAAAAACCTCTGTGATACTAAAGATGGTAGGATTTCTATTGTTGAAACTGATGGATGCATGTCTCGTGTTGTTGAAGTACTTGGCTCTGACACCGATGAAGAAAAGGAACCGGCACTAGCTATTGTACTCTCTTTGTGCTCTCAACGCTTGGAATATTGTGAGCTGGTTATGTACGAGGGTATTATACCATATCTTGTCAATATCTCCAATAAAGGAAACGATAACACAAAGGTGAAAGCAGTTGAACTACTCCGACTTTTGAGAGAAGTTGAGCCAAATCTCAACAACTCTCGAGATTCTAACGAGGATCACTTTGAAGACAAGAAACCGTCAAAGAAGTCCAACTCAATTTTTAAGAAGCTATCGCGGTTTGGAAGATCAAGTTCAGATTCATGA 1830 0.4005 MRELLQQGPSTLDNDSKENSDVKSLQFAAARLNITSATSVVIEKRSIVKLLQKVGPEEENKKAILKNLLYLVRKYGNLLNTGEQAKDYSHHEEPAATENSGRDSLRTDHVKLGPYLNHGQYGTRVSELSRVPPPQEYTCPISFRLMYDPVVIASGETYERMWIQKYFDEGHVICPKTKKKLPHMAMTPNVALKKVISNWCKTNGVSIPNPSRQAEDIRLWEDSIASIRSFGSSMNGLNLPMDLSNISLGSLDNSYNSDSSLVKASHGLNSMLINTRNGSHGHQSHSQIHDTYLVPLSKLHDRQWDSQCQVVEDMKRGFKCNNQAFGSVSSENFIDPLVRFLSTAYDKHDTKALRSGSQLLLEFTKYCRNCVTNLSEDTCSVLASLLESDVIGEALAILETLSNQWSNKADVAASSALTSISKILDSGHREYQHKAIRIMCNFSSNSELCSFMVSLDCIPKILPFFEDKSLWRDCICILKNLCDTKDGRISIVETDGCMSRVVEVLGSDTDEEKEPALAIVLSLCSQRLEYCELVMYEGIIPYLVNISNKGNDNTKVKAVELLRLLREVEPNLNNSRDSNEDHFEDKKPSKKSNSIFKKLSRFGRSSSDS 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03415 609 CDD RING-Ubox_PUB 139 179 IPR045210 -
Tsu04g03415 609 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 595 - -
Tsu04g03415 609 PANTHER U BOX DOMAIN-CONTAINING 1 595 - -
Tsu04g03415 609 SUPERFAMILY ARM repeat 297 574 IPR016024 -
Tsu04g03415 609 MobiDBLite consensus disorder prediction 573 592 - -
Tsu04g03415 609 MobiDBLite consensus disorder prediction 85 107 - -
Tsu04g03415 609 Gene3D - 296 580 IPR011989 -
Tsu04g03415 609 SUPERFAMILY RING/U-box 126 209 - -
Tsu04g03415 609 Pfam U-box domain 134 203 IPR003613 GO:0004842|GO:0016567
Tsu04g03415 609 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 207 IPR013083 -
Tsu04g03415 609 MobiDBLite consensus disorder prediction 572 609 - -
Tsu04g03415 609 SMART Ubox_2 136 199 IPR003613 GO:0004842|GO:0016567
Tsu04g03415 609 MobiDBLite consensus disorder prediction 595 609 - -
Tsu04g03415 609 ProSiteProfiles U-box domain profile. 132 206 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03415 Tsu-Chr4 43377889 43383089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03415 1 569 U-box Gene Family AT4G36550 34.715 6.95e-88 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03415 - - gmx:100798951 752.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03415 04 43377889 43383089 Tsu04g03415 04 43377889 43383089 ECH
Tsu05g00754 05 6354484 6359033 Tsu04g03415 04 43377889 43383089 ECH
Tsu05g00754 05 6354484 6359033 Tsu04g03415 04 43377889 43383089 PCT