Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03409 ATGACTAGAGGAAAGGTGAAACTTTCTTTCATTGTCAATGAAGAGGCAAGGAAAGCAACATATAAGAAAAGGAAGGACAATTTATTGAAGAAGGTTGGTGAACTAAGCACTCTTTGCGGAATTGACGCATGTGCTATAGTTTATGGTCCGTATGAGCCTGAACCTGAGATTTGCCCAACACCAGATGGAGTCCAACGCATGCTCTCAAAATTCATGACATTGCCTGAATTTGAGAAATGCAAAAAAATGGTTAATCAAGAGGCTTTCATGAAACATAGGGTAATGAAGGCTGAGGAACAACTAAAGAGATTGAGGAAAAACAACATAGATATAGAGATGGAAAATCTCATATCTCAATGTATTAAAGAAGGTAAGGTTGTGCATAATAATATGTCAATGATTGATTTGAATGCTCTTACTTTGTTGATTGACCAGAATTTGAAGGACATTGGTAGAAGGATGGAAGCAGAGGAAATGCCTATGGTGATGGGTGATGGCCATGTTGAGATGGTCATAAATAATGATGACATCATGCCAGAGAAATTATTTATGGATTTGATGATTAGTGGTCATCGTAATGATGCCAATCTTCAAAATTAA 600 0.3683 MTRGKVKLSFIVNEEARKATYKKRKDNLLKKVGELSTLCGIDACAIVYGPYEPEPEICPTPDGVQRMLSKFMTLPEFEKCKKMVNQEAFMKHRVMKAEEQLKRLRKNNIDIEMENLISQCIKEGKVVHNNMSMIDLNALTLLIDQNLKDIGRRMEAEEMPMVMGDGHVEMVINNDDIMPEKLFMDLMISGHRNDANLQN 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03409 199 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Tsu04g03409 199 Coils Coil 11 31 - -
Tsu04g03409 199 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Tsu04g03409 199 PANTHER MADS BOX PROTEIN 2 166 - -
Tsu04g03409 199 Gene3D - 13 104 IPR036879 GO:0003677|GO:0046983
Tsu04g03409 199 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Tsu04g03409 199 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tsu04g03409 199 Coils Coil 87 114 - -
Tsu04g03409 199 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu04g03409 199 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu04g03409 199 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu04g03409 199 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03409 Tsu-Chr4 43304736 43305335 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03409 1 155 Type I MADS-box Gene Family AT5G48670 52.903 5.44e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu04g03409 SRF-TF 9.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03409 - - mtr:MTR_4g032260 210.305