Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03408 ATGGCTAGAGGAAAGGTGAAAATTTCTTTCATTGTCGATGCTGCCGCAAGGAAAGCAACATATAAGAATAGGAAAAACAAcctattgaaaaaaattgatgaacTAAGCATCCTTTGTGGAATTGAAGCATGTGCTATAGTTTATGGCCCTCTTGAGTCTGAACCTGAGATTTGGCCAACACCATCGGGAGTCCAACACGTGCTCTCAAAATTCAGAACAATTCCTGAATTTAAGAAGTGCAAAAAAATGGTTAATCAAGAGGTTTTCTTAAAACAAAGAATAATGAAGGCCGAGGAACAACTAAAGAGATTGaggaaaaataataaagataaagagaTAACAAATCTCATGTTTCAATGTCTTAAAGAAGGTAAGGTTGTCCACAATAATATGTCaatgattgatttgaattctctTGTTTGGTTGATTGACCAGAATTTGAAGGACATCAATAGAAAGTTTGAAGCAATGGAAAATAATGGTGAAAGTCAAGCACAAATCATAACTAACCAAAAGCTATGA 522 0.3142 MARGKVKISFIVDAAARKATYKNRKNNLLKKIDELSILCGIEACAIVYGPLESEPEIWPTPSGVQHVLSKFRTIPEFKKCKKMVNQEVFLKQRIMKAEEQLKRLRKNNKDKEITNLMFQCLKEGKVVHNNMSMIDLNSLVWLIDQNLKDINRKFEAMENNGESQAQIITNQKL 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03408 173 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 4 164 - -
Tsu04g03408 173 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu04g03408 173 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Tsu04g03408 173 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu04g03408 173 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu04g03408 173 PANTHER MADS BOX PROTEIN 4 164 - -
Tsu04g03408 173 Coils Coil 18 38 - -
Tsu04g03408 173 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tsu04g03408 173 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Tsu04g03408 173 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Tsu04g03408 173 Coils Coil 80 114 - -
Tsu04g03408 173 Gene3D - 13 122 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03408 Tsu-Chr4 43303449 43303970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03408 1 161 Type I MADS-box Gene Family AT5G48670 52.795 8.14e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu04g03408 SRF-TF 9.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03408 - - gmx:100813231 221.476