Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03402 ATGATGCATCATTGTTGCAGTAGCTCTCAACAAAATCACATAATGGGAACAACAGCAACATGCACATGTGGTATGTTTCATCCTCAAACCATGCTTTTTTCTAATAACtaccaacaacaacatcatgaTGATCATTACGATAATCATTTTGATGCATACTCTTACTCTACTCCTTCTTCTTCCGTTGATTGCACACTTTCTCTTGCTACACCTTCTACCCGTTTATCTGAAGATCAAGACAAACAAAACCGTCGCTCTTCTCTTACTAATTTCTTTTGGAACAAGAATCCTTCTAAATCTAAACAaaattctcaatctcaaaccaaAAACCGAGGTAACAATATCGGTAATAACTCCAACAATGATTCTCTTCTCGCTCGTCGATGTGCTAGTTGTGACACCACTTCTACACCTCTTTGGAGGAACGGTCCTCGTGGCCCCAAGTCACTATGCAATGCTTGTGGGATTAgatacaaaaaagaagaaagaagagcaAATGCAGCAAACATTAATGCCACGTCAGCAGTAACAAACAGTGGAGTAATCGAGTCAGGGCAAGTCTACAGTAACAATTCATGGTACGCACATCAACAGAGTCAAATGTATGGAAATGAGTTACGTTTTATGGAAGATTCAGATGCAGAATCAGAAAATGGAATTCCAAATTTTCTATCATGGAGACTTAACACAAACCTTGTTCATGATTAcacaagatga 717 0.3487 MMHHCCSSSQQNHIMGTTATCTCGMFHPQTMLFSNNYQQQHHDDHYDNHFDAYSYSTPSSSVDCTLSLATPSTRLSEDQDKQNRRSSLTNFFWNKNPSKSKQNSQSQTKNRGNNIGNNSNNDSLLARRCASCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRANAANINATSAVTNSGVIESGQVYSNNSWYAHQQSQMYGNELRFMEDSDAESENGIPNFLSWRLNTNLVHDYTR 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03402 238 SMART GATA_3 123 175 IPR000679 GO:0006355|GO:0043565
Tsu04g03402 238 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 126 170 - -
Tsu04g03402 238 ProSiteProfiles GATA-type zinc finger domain profile. 123 159 IPR000679 GO:0006355|GO:0043565
Tsu04g03402 238 PANTHER GATA TRANSCRIPTION FACTOR 18 1 235 - -
Tsu04g03402 238 MobiDBLite consensus disorder prediction 85 122 - -
Tsu04g03402 238 CDD ZnF_GATA 128 160 IPR000679 GO:0006355|GO:0043565
Tsu04g03402 238 ProSitePatterns GATA-type zinc finger domain. 129 154 IPR000679 GO:0006355|GO:0043565
Tsu04g03402 238 PANTHER GATA TRANSCRIPTION FACTOR 18 1 235 IPR044272 GO:0003700|GO:0009908
Tsu04g03402 238 Pfam GATA zinc finger 129 163 IPR000679 GO:0006355|GO:0043565
Tsu04g03402 238 MobiDBLite consensus disorder prediction 73 122 - -
Tsu04g03402 238 Gene3D - 125 180 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03402 Tsu-Chr4 43262346 43263389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03402 22 238 C2C2-Gata Transcription Factor Family AT3G50870 37.755 2.27e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tsu04g03402 GATA 1.9e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03402 - - gmx:100799154 243.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03402 04 43262346 43263389 Tsu04g03402 04 43262346 43263389 ECH
Tsu05g00745 05 6294778 6296433 Tsu04g03402 04 43262346 43263389 PCT
Tsu04g03402 04 43262346 43263389 Tsu05g00899 05 7796629 7802617 PCT