Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03391 ATGTCATCGAAAAGCAAAATCCGTGAACTCGAGGGGATGAACAATGGAACAAGTAGCATATCAAAGTGGGGTGATGAGAGCAAGAACAGTCTCTATCGCTCAAAATCACACCTTGCGCTCGATGATGATGTGTATGACGTTCCGCACCTTGATCCTCATCTTCGTCAAGATCAAACCTCCACCGGCACCAGAGGTATTCAACAGGGACAATGGGAACTTGAGGGGATGGGTGATGAGAGCAAGCACTGTCTCTATAGCTGGAGGTCACACGTTGCGCTCGATGGCGATGTGTATTACGTTCAGTACCTTAATCCTCATCTTCGTCAAGATCAAACCTCCACCGGCACCAGAGGTATTCAACAGGGACAATGGGAACTCGAGGGGATGAACAATGGAACAAATAGCATATCAAAGTGGGGTGATGAGAGCAAGCACTGTCTCTATAGCTGGAGGTCACACGTTGCGCTCGATGGCGATGTGTATGACCTCCGGCACCTTGATCCTCATCTTCGTCAAGATCAAACCTCTACCGGCACCAGAGGTATTCAACAGGGACAATGGGAAACTCTACCACCTGAATTACTTTTGGACATAATCCGGCGGGTTGAAGAGAGTGAGACATTTTGGCCTGCGCGTGCTGTTGTTGTCTATTGTGCTTCGGTATGTAAATCATGGAGGTCCGTAACGAAAGAGATTATCAAGAATCTTCAACAATGTGGAAAGATCACATTTCCAATTTCATTGAAGCAGGAGCTTGTTTTGGTTTGGTTGTATTGTATAGCGGCGTATAAGAGTAAAAAGTTGTTATTAGCTGCCAAATGGAAGAGATGGTTCGAATTTGCCATATCCTTGGCTGCAGACGATTTTTCTCAAGCCAAATGTGTCGGTAAACTGAGGTCTAATTTTTGGGGCACCAAGTTCACTATATACGACACTCAACCTCCACAAGACGTTGCAGTTCAACCAAATTGTCAATCAAGCGAGAGATTTACTTCTAAGAAGGTGTCGCCAAGAAGTGTTCCATCATATAACCATCTTGTTAGCACCATTTCCTATGAGTGGCTTACTAAAACACCAAGACGAGTGCACTGCGTCATGAACTCTATACCTGTCTCGGCTATTCAGGAAAGGGGAAAAAGTCCAATGACAGATTCATACTCTACAAGCCAAGGCTCGGTCGAACCCTTGATACTAAAAAACAAGGAAGCCAGATGGAATGACTGGTGCAAGAGTTGGTGCCTAGACTACATGGGTCGGGCTATAGAGTCATCTGGAAGGAACTTTCAACTTGTAGCTGCTGTTGATCCGTCTCATAATGTTTCGCTTGCGGAGCAAGAAAGGGTAATCTTGAATTTTGGAAAGGTTGGAAAAGATATATTCGTCATGGAGTACGCTTATCCACTCTCTGCCTTCCAAGCCTTTGCAATCTGCTTGACATCATTCATTTGTAACATGTACAAATCAAAATGCAGAGCTTAA 1479 0.4476 MSSKSKIRELEGMNNGTSSISKWGDESKNSLYRSKSHLALDDDVYDVPHLDPHLRQDQTSTGTRGIQQGQWELEGMGDESKHCLYSWRSHVALDGDVYYVQYLNPHLRQDQTSTGTRGIQQGQWELEGMNNGTNSISKWGDESKHCLYSWRSHVALDGDVYDLRHLDPHLRQDQTSTGTRGIQQGQWETLPPELLLDIIRRVEESETFWPARAVVVYCASVCKSWRSVTKEIIKNLQQCGKITFPISLKQELVLVWLYCIAAYKSKKLLLAAKWKRWFEFAISLAADDFSQAKCVGKLRSNFWGTKFTIYDTQPPQDVAVQPNCQSSERFTSKKVSPRSVPSYNHLVSTISYEWLTKTPRRVHCVMNSIPVSAIQERGKSPMTDSYSTSQGSVEPLILKNKEARWNDWCKSWCLDYMGRAIESSGRNFQLVAAVDPSHNVSLAEQERVILNFGKVGKDIFVMEYAYPLSAFQAFAICLTSFICNMYKSKCRA 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03391 492 Gene3D - 182 233 - -
Tsu04g03391 492 PANTHER TUBBY-LIKE F-BOX PROTEIN 2 174 481 - -
Tsu04g03391 492 Pfam F-box domain 187 232 IPR001810 GO:0005515
Tsu04g03391 492 SUPERFAMILY F-box domain 182 230 IPR036047 GO:0005515
Tsu04g03391 492 MobiDBLite consensus disorder prediction 1 26 - -
Tsu04g03391 492 PRINTS Tubby superfamily signature 294 318 IPR000007 -
Tsu04g03391 492 PRINTS Tubby superfamily signature 398 415 IPR000007 -
Tsu04g03391 492 PRINTS Tubby superfamily signature 445 464 IPR000007 -
Tsu04g03391 492 PRINTS Tubby superfamily signature 466 488 IPR000007 -
Tsu04g03391 492 PRINTS Tubby superfamily signature 416 432 IPR000007 -
Tsu04g03391 492 SUPERFAMILY Tubby C-terminal domain-like 255 481 IPR025659 -
Tsu04g03391 492 Pfam Tub family 262 481 IPR000007 -
Tsu04g03391 492 Gene3D Tubby Protein; Chain A 234 481 IPR025659 -
Tsu04g03391 492 PANTHER TUBBY-RELATED 174 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03391 Tsu-Chr4 43069196 43071190 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03391 169 481 TUB Transcription Factor Family AT2G18280 45.028 3.80e-91 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Tsu04g03391 Tub 4.1e-62 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03391 K19600 - gmx:100777506 373.244