Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03390 ATGTCATTGAAAAGCATAGTAAAAAATGGAATAGGTAGCATATCAAGCAAGTGTTGGCTTTGTCGATCAAAATCACACGATACTTCGGATGTAACTCCAATTGAACCTATTCAACAGGGACAGTGGGCAAATCTACCACCTGAATTGCTTTTGGACATAATCCGGCGGGTTGAAGAGAGTGAGACATCTTGGCCTGCGCGTGCTACTGTTGTCTTTTGTGCTTCAGTATGTAAATCATGGAGGTCCGTCACGAAAGAGATCATCAAGAATCTTCAACAATGTGGAAAGATCACATTTCCAATTTCATTGCAGCAGCCCGGTCCCCGTGATCATCTCATGCAATGCTTTATTAGAAGGATCAAAGAAACTTCTACATTTCTGTTGTACTTAGGTTTGATGCCATCGGAGAATGAGAGTAATAAGTTTTTATTAGCCGCCAAAAAGATAAAAAGGGCTGGACGCATCGAATTTGTCATATCCTTGGCTGCAGACGATTTTTCTACAGCCAGCAACAAATATGTTGCTATTCAGGAAGGGGGAAATCCCGGCCTGACTCCAACATCTTTACCTGAATTATTTGATGAAACTTTTTCTCCTTCTCCGGCACTGAACCAAGGCTCAGTCGAGCCCTTGATATTCCAAAACAAGGCTCCCATATGGGATGATCAGAGCAAGAGTTGGTGCCTAGACTTCAAGGGCCGTGTTAAAGTGGCATCCGCTAAAAACTTTCAACTTTTAGCCGCAGGCGCTGTTGGTCCATCTCATAATGTTTCTCCTTCGAAGCAAGAAAGGATAATCTTGCAGTGTGGAATGATTGAAAAAGATATATTCATCATGGATTACTCTTATCCAATGTCTGCCTTCGAAGCCTTTGTCATCTTCTTGACGTCAATGTAA 897 0.4214 MSLKSIVKNGIGSISSKCWLCRSKSHDTSDVTPIEPIQQGQWANLPPELLLDIIRRVEESETSWPARATVVFCASVCKSWRSVTKEIIKNLQQCGKITFPISLQQPGPRDHLMQCFIRRIKETSTFLLYLGLMPSENESNKFLLAAKKIKRAGRIEFVISLAADDFSTASNKYVAIQEGGNPGLTPTSLPELFDETFSPSPALNQGSVEPLIFQNKAPIWDDQSKSWCLDFKGRVKVASAKNFQLLAAGAVGPSHNVSPSKQERIILQCGMIEKDIFIMDYSYPMSAFEAFVIFLTSM 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03390 298 Gene3D Tubby Protein; Chain A 100 179 IPR025659 -
Tsu04g03390 298 Gene3D Tubby Protein; Chain A 185 298 IPR025659 -
Tsu04g03390 298 PANTHER TUBBY-LIKE F-BOX PROTEIN 2 175 298 - -
Tsu04g03390 298 PANTHER TUBBY-RELATED 4 174 - -
Tsu04g03390 298 Gene3D - 35 90 - -
Tsu04g03390 298 Pfam F-box domain 42 87 IPR001810 GO:0005515
Tsu04g03390 298 Pfam Tub family 103 175 IPR000007 -
Tsu04g03390 298 Pfam Tub family 208 298 IPR000007 -
Tsu04g03390 298 PANTHER TUBBY-RELATED 175 298 - -
Tsu04g03390 298 PANTHER TUBBY-LIKE F-BOX PROTEIN 2 4 174 - -
Tsu04g03390 298 SUPERFAMILY F-box domain 37 85 IPR036047 GO:0005515
Tsu04g03390 298 SUPERFAMILY Tubby C-terminal domain-like 93 297 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03390 Tsu-Chr4 43063708 43065216 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03390 200 298 TUB Transcription Factor Family AT2G18280 52.525 3.59e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Tsu04g03390 Tub 3.7e-33 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03390 K19600 - mtr:MTR_8g077640 297.745