Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03378 ATGGCACCCTCACAGCCACACAACAATACACCAGATGATGCCACACCTGATAATGCTACCCCTGATGATGCTGATGGATCATCATCAAGAAGTTCATCATCAAATTCTAAATCACACAAATCTTCAAGTGGTagcaataataatgatgatactAAGGCCATAGTTGGAGCTGCTGTTGGAGCTGGATTTGTTATTcttgttttggtttgtttttgtttaatttgtaagaggagaaagaagaataagaatggaaatcagcaaaattattattatggtCCTGGAGCACCTGGAGCACAGTCACTTGGCAACGAGAGCAACTATTATAACAGTGGACAACATCCTCATCCAAATTGGCAAGGAGGTGGAGGCCCAAGCCCAGGCCCAGGCCCACATGGAATGGAACATGTTGTTAGAGTTCAACAAGGACCAAATGGAGGTGGAGTTTGGGGTGCACCACACCCTTTAATGAATAGTGGTGAAATGAGTTCCAATTATTCATATGGAATGGGCCCACCAGGGTCCATGGCTTCTCATTCACCAGGCATATCATCTCTTAATCTTAAGGGTGGTACCTTCACTTATGAGGAATTGGCATCCGCTACTAAGGGATTTGCTAATGAGAATATTATAGGACAAGGTGGTTTTGGTTATGTCCATAAAGGAACTTTGCCTAATGGAAAAGAAGTTGCTGTTAAAAGTTTAAAAGCGGGTAGTGGACAAGGCGAACGTGAATTTCAGGCAGAGATTGATATCATTAGTCGTGTTCATCATCGTCATCTTGTGTCTCTTGTTGGATATTGTGTTTCCAATGCACAAAGAATGTTGGTCTACGAATTTGTTCCAAATAAAACATTGGAACATCACCTTCATGGAAAGGGTGTGCCTACCATGGATTGGCCTACTAGAATGAAAATTGCATTAGGATCAGCTAAAGGGCTTGCTTACCTTCATGAAGATTGTAGTCCTCGCATTATCCATCGTGATATTAAGGGTGCGAATGTTCTAATTGATGATAGCTTTGAAGCTAAGGTGGCTGATTTTGGATTGGCTAAGTTGACTACCGATACTAATACACATGTTTCAACCCGTGTCATGGGGACATTCGGGTACATGGCCCCAGAATATGCATCAAGTGGAAAATTGACAGAGAAATCAGATGTTTTCTCATTTGGGGTTATGTTACTAGAACTCTTAACTGGGAAACGACCTTTGGATTTGACCAATGTCATGGACGAAAGTTTAGTCGATTGGGCTCGACCACTCTTGAATAAAGCAGAGGAGGATGACAACTATAGTCAATTGGTGGATCCATTTTTGGAAGGAAAATACAATCATCAAGAAATGATAAGATTGGCAACTTGTGCTGCTAGTAGTGTTCGTCATTCTGCTAAGAAACGTCCAAAAATGAGTcagATAGTAAGGGCATTAGAAGGTGATGTGTCACTAGAAGACTTAAAAGAGGGGATGGTGAAATCTTCAGGGAATTCAAATTCAAGTCCTTATACATTTACATCTGGTTCAGAATATGATACAAGACAATACAATGCAGATATGGTGAAGTTCAGAATGGCAATAATGGAAAATCAAGAATATGGTGATAGCACTGAGCTCCACTAG 1617 0.389 MAPSQPHNNTPDDATPDNATPDDADGSSSRSSSSNSKSHKSSSGSNNNDDTKAIVGAAVGAGFVILVLVCFCLICKRRKKNKNGNQQNYYYGPGAPGAQSLGNESNYYNSGQHPHPNWQGGGGPSPGPGPHGMEHVVRVQQGPNGGGVWGAPHPLMNSGEMSSNYSYGMGPPGSMASHSPGISSLNLKGGTFTYEELASATKGFANENIIGQGGFGYVHKGTLPNGKEVAVKSLKAGSGQGEREFQAEIDIISRVHHRHLVSLVGYCVSNAQRMLVYEFVPNKTLEHHLHGKGVPTMDWPTRMKIALGSAKGLAYLHEDCSPRIIHRDIKGANVLIDDSFEAKVADFGLAKLTTDTNTHVSTRVMGTFGYMAPEYASSGKLTEKSDVFSFGVMLLELLTGKRPLDLTNVMDESLVDWARPLLNKAEEDDNYSQLVDPFLEGKYNHQEMIRLATCAASSVRHSAKKRPKMSQIVRALEGDVSLEDLKEGMVKSSGNSNSSPYTFTSGSEYDTRQYNADMVKFRMAIMENQEYGDSTELH 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03378 538 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 3 534 - -
Tsu04g03378 538 MobiDBLite consensus disorder prediction 101 116 - -
Tsu04g03378 538 Pfam Protein tyrosine and serine/threonine kinase 207 475 IPR001245 GO:0004672|GO:0006468
Tsu04g03378 538 ProSiteProfiles Protein kinase domain profile. 204 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03378 538 SMART serkin_6 204 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu04g03378 538 ProSitePatterns Protein kinases ATP-binding region signature. 210 232 IPR017441 GO:0005524
Tsu04g03378 538 Gene3D Transferase(Phosphotransferase) domain 1 280 493 - -
Tsu04g03378 538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 324 336 IPR008271 GO:0004672|GO:0006468
Tsu04g03378 538 SUPERFAMILY Protein kinase-like (PK-like) 185 476 IPR011009 -
Tsu04g03378 538 MobiDBLite consensus disorder prediction 101 130 - -
Tsu04g03378 538 Gene3D Phosphorylase Kinase; domain 1 175 279 - -
Tsu04g03378 538 PANTHER RECEPTOR-LIKE KINASE 3 534 - -
Tsu04g03378 538 MobiDBLite consensus disorder prediction 1 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03378 Tsu-Chr4 42950694 42954455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03378 52 522 Trihelix Transcription Factor Family AT1G70460 50.529 1.06e-150 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Tsu04g03378 PK_Tyr_Ser-Thr 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03378 - - gmx:100805872 719.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00730 05 6147971 6151187 Tsu04g03378 04 42950694 42954455 ECH
Tsu04g03378 04 42950694 42954455 Tsu04g03378 04 42950694 42954455 ECH
Tsu05g00730 05 6147971 6151187 Tsu04g03378 04 42950694 42954455 PCT