Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03373 ATGGTTGATTTAGACAATGTTTCAACTGCTTCAGGAGATGCTAGCATCTCTTCATCtggcaacaacaacaataataatgatcAAACCCCTAAGCCCaccaagaaaaaaagaaatctcCCAGGAATGCCAGATCCAGAAGCAGAAGTGATAGCTTTATCACCAACAACTTTGTTAGCAACAAATAGATTTGTATGTGAAATATGTAACAAAGGTTTTCAAAGAGATCAGAATCTTCAACTTCATAGAAGAGGACATAATTTACCATGGAAACTAAGACAAAGATCAAGTAAAGAAGTTAGGAAAAGGGTTTATGTTTGTCCTGAATCAACTTGTGTTCATCATGATCCTTCTAGAGCTTTAGGTGATTTAACTGGTATTAAAAAGCACTTTTGTAGAAAACATGGTGAGAAAAAGTGGAAATGTGATAAATGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCTAAAGTTTGTGGTTCTAGAGAGTATAAATGTGATTGTGGAACTGTTTTTTCCAGgAGGGATAGTTTTATCACACATAGAGCTTTTTGTGATGCTTTGGCTGAGGAGAATGCAAAATCTCAGAATCAAGCTGTTGGGAAAGCTAATTCAGAATCTGATTCAAAGGTTTTGACTGGTGATTCATTGCCGTCGGCGCCGACGCCGCCGGCTGCTATAACAACTCCTCAGTCAAATAGTGGTGTGTCCTCTGCTATGGAGAATCAGAAGCTAGatTTGCCTGAAAATCCGCCGCAAATCGTAGAGGAGCCAGAAGCTATTGTTACTACtactgctgctgctgctgctgccaCTGCTGTTTTAAATGCGAATTGTAGTAGCAACAGCGCTAGCTCGACAAGTAATGGTTGTGCTGCTTCTAGCAGTGGCGTGTTTGCAAGTTTGTTTGCTTCGTCAACAGCTTCGGCATCTGCAAGTATGCAATCTCATATACCGGTGTTCTCTGACTTAATTAGGTCCATGGGATGTCCAGATCGGTCGACAGATTTCTCAGCTCCTCCGTCATCTGAGGCTATATCTCTTTGTCTCTCGACCAATCCTGGATCATCAATTTTCGGAACAGGAGGGCAGGAGTGTCGTCAATATGTGCCGACACATCAGCCGCCAGCAATGTCAGCCACTGCATTACTACAGAAAGCTGCTCAAATGGGAGCTGCTGCAACTAACGCATCATTGCTTCGCGGGCTCGGAATCGTGTCATCTTCAGCTTCCACTTCAACAGGTCAACATGATAGTCTGCACTGGGGTCTCGGACAAGTGGAACCGGACGGTTCTGGTTTAGGTCCAGCAGGACTTGGACTCGGACTTCCTTCTGACGGTGATTCAGGACTAAAGGAATTGATGTTAGGGACTCCATCAATGTTTGGTCCTAAACAGACAACTCTTGATTTTCTAGGATTAGGGATGGCTGCTGGTGGAAGTGCCGGCGGAGGCTTGTCAGCACTTATCACATCAATCGGTGGCAGCGGCGGTTTGGATGTTACTGCAGCAACTGCATCCTTCGGTAACACAGAGTTCTCTGGCAAAGATATTGGAAGGAGTTCATGA 1575 0.4197 MVDLDNVSTASGDASISSSGNNNNNNDQTPKPTKKKRNLPGMPDPEAEVIALSPTTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPESTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKVCGSREYKCDCGTVFSRRDSFITHRAFCDALAEENAKSQNQAVGKANSESDSKVLTGDSLPSAPTPPAAITTPQSNSGVSSAMENQKLDLPENPPQIVEEPEAIVTTTAAAAAATAVLNANCSSNSASSTSNGCAASSSGVFASLFASSTASASASMQSHIPVFSDLIRSMGCPDRSTDFSAPPSSEAISLCLSTNPGSSIFGTGGQECRQYVPTHQPPAMSATALLQKAAQMGAAATNASLLRGLGIVSSSASTSTGQHDSLHWGLGQVEPDGSGLGPAGLGLGLPSDGDSGLKELMLGTPSMFGPKQTTLDFLGLGMAAGGSAGGGLSALITSIGGSGGLDVTAATASFGNTEFSGKDIGRSS 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03373 524 SMART c2h2final6 63 85 IPR013087 -
Tsu04g03373 524 SMART c2h2final6 139 159 IPR013087 -
Tsu04g03373 524 SMART c2h2final6 104 134 IPR013087 -
Tsu04g03373 524 MobiDBLite consensus disorder prediction 8 29 - -
Tsu04g03373 524 MobiDBLite consensus disorder prediction 228 246 - -
Tsu04g03373 524 SUPERFAMILY beta-beta-alpha zinc fingers 62 159 IPR036236 -
Tsu04g03373 524 Gene3D Classic Zinc Finger 117 198 - -
Tsu04g03373 524 MobiDBLite consensus disorder prediction 198 253 - -
Tsu04g03373 524 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Tsu04g03373 524 Gene3D Classic Zinc Finger 43 113 - -
Tsu04g03373 524 MobiDBLite consensus disorder prediction 1 46 - -
Tsu04g03373 524 MobiDBLite consensus disorder prediction 198 218 - -
Tsu04g03373 524 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Tsu04g03373 524 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 2 523 - -
Tsu04g03373 524 PANTHER ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 2 523 - -
Tsu04g03373 524 Pfam Zinc finger, C2H2 type 63 85 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03373 Tsu-Chr4 42908781 42911800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03373 2 524 IDZ Gene Family AT5G66730 57.838 7.46e-178 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu04g03373 zf-C2H2 0.0053 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03373 K25869 - gmx:100806404 660.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03373 04 42908781 42911800 Tsu04g03373 04 42908781 42911800 ECH