Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03370 ATGAGAGTTCCTCCTCCTGCagcttcttcatcttcatcaacatcatcaccgCAACAGCCAAAACTCACCACCCAAAACATCCTTGTTCCCACTCCCAATAACCCAACAACgacaacaaccaccaccaacacTGCCACCTTGTGCTACGAACCGCGGTCCGTTCTCGAACTTTGTCGTAGTCCTAGCCCAGAAAAGAAACCAAGCCAACAAGAACAACTGCAACAACAACATAACAATAATCACgaagtggaagaagaagaagaagatcatGCTTCCTTGCCTAATTTGGATTGGTGGGACTCCATCATGAAAGATTTGGGTTTACAAGACGACTCTTCAACTCCCATAATACCTCTCCTGAaaaataccaataatacccctGAAATTTACCCTAACCCTTCTCAAGACCAATTTGATCACACTCAAGATTTCACTTCTCTCTCAGATATTTACTCTAATAATCAAAACCTGGCCTATAATTACCCAAACACAAACGCTAATCTGGATCATTTAGTTCATGAATTCAATCATAATAACCaaccaaacaacaacaataacagtaattgggatttcattgaaGAACTTATTCGTGCCGCGGATTGCTTCGATAACAATCATCTTCCATTAGCTCAAGTGATACTAGAGCGTCTCAATCAACGGTTAAGATCGCCTACCGGTAAGCCACTACACCGAGCGGCGTTTCATTTCAAAGATGCTCTTCAATCTCTTCTCTCCGGTTCAAATCGGACTAATCCGCCACGTCTTTCATCCATGGTGGAGATTGTGCAAACCATAAGAACATTTAAAGCCTTTTCTGGAATTTCACCGATTCcaatgttttcaattttcaccaCTAATCAAGCGTTACTTGAAGCGCTTCATGGATCATTGTTCATGCACgttgttgattttgaaatcGGATTAGGAATTCAATACGCTTCTCTTATGAAAGAGATTGCTGAAAAAGCTGTTAACGGTTCGCCGTTGCTTCGTATCACCGCCGTCGTGCCGGAGGAATACGCCGTTGAAAGTAGGCTTATTCGTGAGAATCTGAATCAGTTTGCGCATGATCTTGGAATTCGTGTTCAGGTTGATTTTGTGCCGTTAAGGACTTTTGAAACGGTGTCGTTTAAGGCTGTGAGGTTTGTTGATGGTGAGAAGACTGCAATTCTGTTAACGCCGGCGATTTTCTGTCGCCTTGGATCCGAAGGTACCGCGGCGTTTCTCTCTGATGTTCGGAGGATAACTCCTGGTGTGGTGGTTTTTGTTGACGGCGAAGGATGGACGGAGGCGGCATCGGCGGCGTCATTTCGCCGTGGAGTTGTGAATAGCTTGGAGTTTTATTCTATGATGCTGGAGTCATTAGATGCGTCTGTGGCGGCCGGTGGTGGAGGAGAGTGGGCGAGGAGAATCGAGATGCTTTTGCTTCGGCCAAAGATTATTTCAGCTGTGGAAGCTGCCGGAAGAAGAACAACGCCGTGGAGAGAGGCGTTTTACGGCGCCGGAATGAGGCCGGTACAGTTGAGTCAGTTTGCGGATTTTCAGGCAGAGTGTTTGTTAGCAAAGGTGCAAATCAGAGGCTTCCACGTGGCGAAACGACAGGCTGAGTTGGTGCTTTTTTGGCATGAGAGGGCCATGGTTGCCACGTCAGCTTGGCGATGTTAG 1665 0.418 MRVPPPAASSSSSTSSPQQPKLTTQNILVPTPNNPTTTTTTTNTATLCYEPRSVLELCRSPSPEKKPSQQEQLQQQHNNNHEVEEEEEDHASLPNLDWWDSIMKDLGLQDDSSTPIIPLLKNTNNTPEIYPNPSQDQFDHTQDFTSLSDIYSNNQNLAYNYPNTNANLDHLVHEFNHNNQPNNNNNSNWDFIEELIRAADCFDNNHLPLAQVILERLNQRLRSPTGKPLHRAAFHFKDALQSLLSGSNRTNPPRLSSMVEIVQTIRTFKAFSGISPIPMFSIFTTNQALLEALHGSLFMHVVDFEIGLGIQYASLMKEIAEKAVNGSPLLRITAVVPEEYAVESRLIRENLNQFAHDLGIRVQVDFVPLRTFETVSFKAVRFVDGEKTAILLTPAIFCRLGSEGTAAFLSDVRRITPGVVVFVDGEGWTEAASAASFRRGVVNSLEFYSMMLESLDASVAAGGGGEWARRIEMLLLRPKIISAVEAAGRRTTPWREAFYGAGMRPVQLSQFADFQAECLLAKVQIRGFHVAKRQAELVLFWHERAMVATSAWRC 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03370 554 MobiDBLite consensus disorder prediction 63 77 - -
Tsu04g03370 554 PANTHER SCARECROW-LIKE PROTEIN 15 15 553 - -
Tsu04g03370 554 Coils Coil 66 86 - -
Tsu04g03370 554 MobiDBLite consensus disorder prediction 1 91 - -
Tsu04g03370 554 MobiDBLite consensus disorder prediction 1 49 - -
Tsu04g03370 554 ProSiteProfiles GRAS family profile. 182 553 IPR005202 -
Tsu04g03370 554 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 15 553 IPR005202 -
Tsu04g03370 554 Pfam GRAS domain family 192 553 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03370 Tsu-Chr4 42887254 42889167 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03370 89 553 GRAS Transcription Factor Family AT4G36710 55.031 5.23e-168 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tsu04g03370 GRAS 1e-84 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03370 - - cam:101510420 912.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03370 04 42887254 42889167 Tsu04g03370 04 42887254 42889167 ECH