Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03369 ATGGGGACTAAGGAGGATAGCACAACTAAACCTTctaaatcatcttcatcaactcAGGAGGTACCAACAGTACCGCCACCATATCCAGATTGGTCAAGTTCCATGCAGGCCTACTATAATCCTGGAGCCGCTCCGCCTCCCTATTATGCCTCAACTGTTGCTCCGCCAAACCCCCATCCGTATATGTGGGGAGGCCAGCATCCTATGATGGCGCCATATGGGACTCCAGTCCCGTATCCTGCTATGTACCCTCCTGGAAATATCTATGCTCATCCTAGCATGGTAGTGACTCCAAGTGCTATGCACCAAACTACGGAGTTTGAAGGCAAGGGACCTGATGGAAAGGATAAAGATTCATCTAAAAAATCGAAGGGCATTTCTACGAATACAAGTGCCAAAGCAGGAGAGAGTGGAAAGGCAGGCTCAGGTTCAGGCAATGATGGCTTTTCACAAAGTGGTGAAAGTGGTTCAGAGGGTTCATCAAATGGTAGTGATGAGAACCAACAGGAATCATCTAGAAACAAGAAGGGAGGCTTTGACCTCATGCTTGTTAATGGAGCAAACGTACAGAATAATACCACTGGACCCATTTCTCAATCGCCTGTTCCTGGAAACCCTATTGTCTCGATGCCTGCTACTAATCTTAATATCGGAATGGATTTATGGAATGCATCTCCTGCTAATGCTGAAGCCGCCAAAATGAGACACAATCAATCTAGTGCCCCGGGAGCTGGTGAACAATGGATGCAACAAGATGATCGTGAGCTGAAAAGACAGAAAAGAAAACAGTCTAATCGAGAGTCAGCTAGGAGGTCAAGACTACGCAAGCAGGTTAGTTATACTTGA 846 0.4551 MGTKEDSTTKPSKSSSSTQEVPTVPPPYPDWSSSMQAYYNPGAAPPPYYASTVAPPNPHPYMWGGQHPMMAPYGTPVPYPAMYPPGNIYAHPSMVVTPSAMHQTTEFEGKGPDGKDKDSSKKSKGISTNTSAKAGESGKAGSGSGNDGFSQSGESGSEGSSNGSDENQQESSRNKKGGFDLMLVNGANVQNNTTGPISQSPVPGNPIVSMPATNLNIGMDLWNASPANAEAAKMRHNQSSAPGAGEQWMQQDDRELKRQKRKQSNRESARRSRLRKQVSYT 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03369 281 PANTHER G-BOX-BINDING FACTOR 1 1 278 - -
Tsu04g03369 281 CDD bZIP_plant_GBF1 258 277 IPR045314 GO:0003700|GO:0006355
Tsu04g03369 281 Pfam bZIP transcription factor 254 278 IPR004827 GO:0003700|GO:0006355
Tsu04g03369 281 MobiDBLite consensus disorder prediction 1 70 - -
Tsu04g03369 281 Pfam G-box binding protein MFMR 1 94 IPR012900 -
Tsu04g03369 281 MobiDBLite consensus disorder prediction 104 204 - -
Tsu04g03369 281 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 260 275 IPR004827 GO:0003700|GO:0006355
Tsu04g03369 281 MobiDBLite consensus disorder prediction 124 168 - -
Tsu04g03369 281 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 278 IPR044827 GO:0003700|GO:0006355|GO:0043565
Tsu04g03369 281 MobiDBLite consensus disorder prediction 108 123 - -
Tsu04g03369 281 MobiDBLite consensus disorder prediction 232 246 - -
Tsu04g03369 281 MobiDBLite consensus disorder prediction 1 21 - -
Tsu04g03369 281 MobiDBLite consensus disorder prediction 228 281 - -
Tsu04g03369 281 Pfam Disordered region downstream of MFMR 116 227 - -
Tsu04g03369 281 MobiDBLite consensus disorder prediction 185 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03369 Tsu-Chr4 42880114 42885307 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03369 1 278 bZIP Transcription Factor Family AT4G36730 50.714 3.77e-71 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Tsu04g03369 MFMR_assoc 2.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03369 K09060 - gmx:778191 383.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g03369 04 42880114 42885307 Tsu04g03369 04 42880114 42885307 ECH