Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03368 ATGTTTTATGACCATGTCATGTTCTATAATGAAGGAGTTTATTCTGCTGTCATTGGAGGAGAGGGGCACATAACGAAGATGAAGACTCCgagcaagaaaaacaaaagaactgAAGACAAAGAGGGTGAAACCAATGGAGGTGATTCATATATGCGTGAAAGCAATGCAGTTGATGATCTGCCTTTGGCCAAAAGTAATGACGATCAACATTTGGTTGAAAGCAATAAACGTGAAGATGGCGAGCAGGgcaagaagaaaaataaaaagagcaagaaaaacaaaagaactgAAGACAAAGAAGGTGAAACCAACAGAGGTGGTTCATATATGTCTGAAAGCAATGCAGTTGATGATCTGCCTTTGGCCAAAAGTAATGACGATCAACATTTGGTCGAAAGCAATAAAAGTGAAGATGGTGAGCAGGgcaagaagaaaaataaaaagaagaaatcgagtgaagaaatcaaagataaggAGTTCAAAAGCAATGAATGTGAAGATGATAACCAaggaaaaaagataaaaaagaagcAGAAGCTAAATGAAGGAAACACACTAAAGGAGTGTAATGACTTTAGAAGCAATGGAGATGAAGATGGCAAGCAAGACAAAAaggtgaagaaaaagaagaaactaagtgaagaaagaaaacgTAAGGAGTTTGAAAGCAATGAATATGAAGATGATAACCAaggaaagaagatgaaaaagaagCAGAAGCTAATTGAAGGAAACACACTAAAGGAGTGTAATGACTTTAGAAGCAATGGAGATGAAGATGGCAAGCAAGacaaaaagatgaagaaaaagaagaaactaaGTGAAGAAAACAACCATGAGGAGTATAACGAGCGCAACAGCAATAAATGTGAAGATGATAACCAAGGAAAGAAGTTGAAAAAAAAGCAGAAGCTAATTGAAGGAAACACACTGAAGGAGTGTAATGACTTTAGAAGCAATGGAGGTGAAGATAATGAGCAAgacaagaagatgaagaaaaagaaaaagataaagaaaagtgAAGAAAGTCAACATAAGGAGTATAATGAGTTCAAAAGCAATGAATGTGAAGATGACcaagggaagaagatgaaaaagaagCGGAAACTAATGGACAGAAACACACTTAATGAGTGTAATGACTTTAGAAGCAATGGATGTGAAGATGGTGAGCAagacaagaagaagaaaaagaaacaaagcaAAGAAAGTAAACGTAAGGAGTCTAGCGAGTTTAAAAGCAATGATGGGAAACCCAAACGAGTAACTTTTTCTGATGAAGTAGAGACGTTTTGTTGTGATGGTGAGCAagacaagaagaagaaaaagaaacaaagcgAAGAAAGTAAACATAAGGACTCTAGCGAGTTTAAAAGCAATGAAGGGAAACCCAAACGAGTAACTTTTTCTGATGAAGTAGAGATTTTTTATTGTGATAGCTTAGTGCGTGGGAAAAGGTTTACACCCGAAGAAGATGAGACGCTCAAAGAATCTATTTTTGCCTATATAGATTCTCATGGTCTGGGCGAAGAAGGTCTGGATAAGATTCTTCATGCCCAATCACACAGAGAGGTTAGAGGCTGTTGGAAAGAAATTGCACGAGCCCTACCTCATAGGCCCCACCAGAGTGTGTATCAACGTGGTCATGCTTTGTTGGAAAATATTGGTAAATGTAATTGGACACCTGATGAGCTTGAATTTATACGGAAGTCCTACGAGCAACATGGACCTGATTGGAGGCTAATAGCTGATACTTTGGGTAAAAGTCGAGATCAGATAAAAGATGCGTGGCGTAGAGTAAAATATGAGAAAGCAAGATTTGGACATTGGTCCCAAGAGGAGTATCAAACTTTGTTTAATTTAGTAAACCTGGATCTGCGCACAAGGTCTTTAGAGCCTTATAGAAAAACACAACATGGTATGTTGCGAGATAATATTTGTTGGGAGGCAATTGGTCACAAATTGGAAACCCGAAACAGTGCATTTTGCTGCAAGAAGTGGTATGAGGAGTTAACATCACCAATGGTTGCTCGTGGTGAATGGTGTGATACTGACGACTTCCGCTTGATAGATGCTTTATATACTTTGGATGCTTGCTGCATGGAGGAGGTAGATTGGGACGAGCTACTTGAGCATAGGTCTGGTGATACATGCAGAAAACGATGGGATCAAATGGTCCAACATCTTGGGGAGCATGCAAGGAAGCCATTTATTGAGCAGGTTGAAGTTCTTACAAAGAGATTCTGCCCTGACTTGTTGAAAGAAAGAGAAGCCTTTGATAACAAACCTGTGATTTGTCGAGGTAGCTAA 2310 0.339 MFYDHVMFYNEGVYSAVIGGEGHITKMKTPSKKNKRTEDKEGETNGGDSYMRESNAVDDLPLAKSNDDQHLVESNKREDGEQGKKKNKKSKKNKRTEDKEGETNRGGSYMSESNAVDDLPLAKSNDDQHLVESNKSEDGEQGKKKNKKKKSSEEIKDKEFKSNECEDDNQGKKIKKKQKLNEGNTLKECNDFRSNGDEDGKQDKKVKKKKKLSEERKRKEFESNEYEDDNQGKKMKKKQKLIEGNTLKECNDFRSNGDEDGKQDKKMKKKKKLSEENNHEEYNERNSNKCEDDNQGKKLKKKQKLIEGNTLKECNDFRSNGGEDNEQDKKMKKKKKIKKSEESQHKEYNEFKSNECEDDQGKKMKKKRKLMDRNTLNECNDFRSNGCEDGEQDKKKKKKQSKESKRKESSEFKSNDGKPKRVTFSDEVETFCCDGEQDKKKKKKQSEESKHKDSSEFKSNEGKPKRVTFSDEVEIFYCDSLVRGKRFTPEEDETLKESIFAYIDSHGLGEEGLDKILHAQSHREVRGCWKEIARALPHRPHQSVYQRGHALLENIGKCNWTPDELEFIRKSYEQHGPDWRLIADTLGKSRDQIKDAWRRVKYEKARFGHWSQEEYQTLFNLVNLDLRTRSLEPYRKTQHGMLRDNICWEAIGHKLETRNSAFCCKKWYEELTSPMVARGEWCDTDDFRLIDALYTLDACCMEEVDWDELLEHRSGDTCRKRWDQMVQHLGEHARKPFIEQVEVLTKRFCPDLLKEREAFDNKPVICRGS 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03368 769 MobiDBLite consensus disorder prediction 63 86 - -
Tsu04g03368 769 MobiDBLite consensus disorder prediction 384 421 - -
Tsu04g03368 769 MobiDBLite consensus disorder prediction 122 331 - -
Tsu04g03368 769 SMART sant 606 673 IPR001005 -
Tsu04g03368 769 SMART sant 556 603 IPR001005 -
Tsu04g03368 769 SMART sant 483 554 IPR001005 -
Tsu04g03368 769 ProSiteProfiles Myb-like domain profile. 673 726 IPR001005 -
Tsu04g03368 769 Pfam Myb-like DNA-binding domain 560 618 - -
Tsu04g03368 769 CDD SANT 559 601 IPR001005 -
Tsu04g03368 769 MobiDBLite consensus disorder prediction 340 376 - -
Tsu04g03368 769 PANTHER GB|AAC33480.1 438 765 - -
Tsu04g03368 769 Gene3D - 601 675 - -
Tsu04g03368 769 MobiDBLite consensus disorder prediction 26 47 - -
Tsu04g03368 769 MobiDBLite consensus disorder prediction 442 464 - -
Tsu04g03368 769 Gene3D - 561 600 - -
Tsu04g03368 769 ProSiteProfiles Myb-like domain profile. 602 671 IPR001005 -
Tsu04g03368 769 Coils Coil 209 229 - -
Tsu04g03368 769 MobiDBLite consensus disorder prediction 24 421 - -
Tsu04g03368 769 ProSiteProfiles Myb-like domain profile. 552 601 IPR001005 -
Tsu04g03368 769 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 552 605 IPR017930 -
Tsu04g03368 769 SUPERFAMILY Homeodomain-like 532 613 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03368 Tsu-Chr4 42873655 42876143 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03368 529 765 MYB-Related Transcription Factor Family AT3G18100 25.506 1.94e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu04g03368 Myb_DNA-bind_6 2.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03368 - - mtr:MTR_8g077990 711.835