Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03364 ATGGCTGGAGACATTGATTCTAGGAAGTCTACTTCGGGCTACATGATTAAGTTTGCAGGGGGAGCTGTGGCTTGGCAGTCCAGATTGCAAAACCAAAGTGCTATTCATCTTGGTAAGAATCCAACTTTTCATAATAGGTCCAAACATATTGATGTGAGGTATAATTGGATACGTGATGTTTTGGATGCTAAGTTGTTGGAACTAGCTAAGGTGTTGAAGAGAAGGATGGAAGCTAACCGTCAATCAGAGAATGACGTTGTTTTTGAGGATTTGGTTGGTGATGAACAAATAGATAGTTCATTTGACAATGAGGAATACAATAGCAGTGATGGTGAAATTGGAGGTCGAATTTATGAAGAAATGAGTGATAACGAAGAAGGCAGTAAGTCTGAAGGAGAAACGAAGTCGGAAGGTATAGTTTTTTCTGATCTTGCGATTGCTTACAAGTTCTACTACTGGTATGGAAGAACAACTGGGTTTTCTGTGCGCAAGAGTCGTTATGTGAGGAATGCTGCTGGTGAGATTGTTCAGAAAACGTTTTTATGTTCTCGCGAAGGGTATAGAGAATCTAATGCATTAACACTAGAGAAACGGAAGCGTGAGCCAAAAAATGAAACTAGGTGTGGATGTGGAGCGAAATTGAGAGTGCACATAGATATTATTACCAACCGTTGGTATGTCACGTTATTTCAATTTGATCATAATCATGCACTATTAGATGGGACTATGTGTGGTATGTTACCGGCACATAGAAAGCTGACTGAGAAGGGTGTTCAGGATATTGAGAGTCATGGAAATGTTGGGATTAGACCATATCAGATGTATGGTGCAATGGCTAATTCGGCTGGGGGTTTCCACAAGGCAGGCTTtgtaaaaaaagatttatacAACCAGCTCAAGAGACAAAGGAAAATAATTGCATATGATGCTAGTGAAGCTGTGAAATATCTGTATGATCTGGGAAAGCAAGACCAACTGATGTATGTTGCGCACAAAGTTGACAATGAAAATAGGCTAGAACGACTATTTTGGTGCGATGGAGAAAGTAGGAAGAACTTTGAAGTCTTCGGTGATGTTTTAGCCTTCGATGCCACTTACCAGAAGAACAAATACAATTGCCCGTTTGTTGTGTTCTCCGGTGTTAACCATCACAATCAAACCATAGTTTTTGCAACCGGTCTTGTGACAAGGGAGACTGAAGAAACGTATGTGTGGTTGTTAGAGCAATTTGCATGTGCAATGCAAGGCAAGACCCAAATATCTGTGATCACAGACGGTGATATTGCAATGAAAAATGCTATCAGGAAAGTGTTTCCCAAAGCCCATCACCGATTATGTGCGTGGCATCTACTAAGAAATGCTTCGACAAATGTTGGGATACCTGATTTCATGCGGTACCTGAAGCGATGCATGCTGGGTGACATTGAGATCAACAAGTTTGAAGAGCTTTGGGGTGACATGTTAGAAAAGTTTGGTTTGGAAGACAACATGTGGATTAAAGAAATGtatgcaaaaagaaaaatgtggtCTACAGCTTACATCAGGGGATTTTTCTTTGCTGGATTAAGGACAACCTCTCGCTGTGAGGCTCTCCATAGCCACCTTCGCCAATTTGTTCATTCAAGGATCAACctacttaactttgttcaacAATTTCAAAGATGCCTAACTTATTTTCGATTTAGGGAAATTGAAGCTGATTTCCGCTCTAATTATGGACAACCTGTCATGCAAAGTAGTCTCCATAGTATCGAGAGATCGGCTGCTAGTCAATATACGAAGGAGATTTTCAACATGTTTAAAGTTGTTCTTAGTAAATGTATGTTGTTGAAGGTATTGGAAGTACAACAAATGTCAAGCTGTTGCATTTACAAAGTGGCGAAGTATTGTGGTAATGGTGATGCTTGGTATGTTACACATTCTGCATATGCTGAGGAAAAATTCAACTGTTCGTGTTTTAGAATGGAATCAATTGGATTGCCATGTGATCACATTGTGTGTGTTTTGGTATATCTTGACATTGATGAACTTCCTAAGTGCTTGGTATTTCCGAGGTGGACAAAAATTGCTAAAGATTCAATTATTGGTAGTTATCCCGGGGGAAGTTTTTATTGGGATTCACAAGTTGCAGCTCGATATTCTAGTTTGGTGAAGATGTCAAAGGACGTTGCTGAGTTGGTGTATGATGATTTGGATGATTACAACCGTGTTGTTGATGTTCTCCACACTGAATTAAAGCGTCTTAAAGCTAAGCATCATGGCAAAGGACGTAAGACAAATGTTCGTAGTGGTACCATCGATGTAGATGTGTTGGATCCTCCACAAGTTAGAACCAAGGGATGTGGTTCTAATCCTACACCGACACCTAGTAACCGTAGACGTGGCCCAACTTGCGGAGGATGTGGCATCATTGGTCATAACAGACGTTTCTGTCGGAATGCAAGCATTGTTCATCCTGCAATCACACCTCCTCCCCAACTATGA 2484 0.399 MAGDIDSRKSTSGYMIKFAGGAVAWQSRLQNQSAIHLGKNPTFHNRSKHIDVRYNWIRDVLDAKLLELAKVLKRRMEANRQSENDVVFEDLVGDEQIDSSFDNEEYNSSDGEIGGRIYEEMSDNEEGSKSEGETKSEGIVFSDLAIAYKFYYWYGRTTGFSVRKSRYVRNAAGEIVQKTFLCSREGYRESNALTLEKRKREPKNETRCGCGAKLRVHIDIITNRWYVTLFQFDHNHALLDGTMCGMLPAHRKLTEKGVQDIESHGNVGIRPYQMYGAMANSAGGFHKAGFVKKDLYNQLKRQRKIIAYDASEAVKYLYDLGKQDQLMYVAHKVDNENRLERLFWCDGESRKNFEVFGDVLAFDATYQKNKYNCPFVVFSGVNHHNQTIVFATGLVTRETEETYVWLLEQFACAMQGKTQISVITDGDIAMKNAIRKVFPKAHHRLCAWHLLRNASTNVGIPDFMRYLKRCMLGDIEINKFEELWGDMLEKFGLEDNMWIKEMYAKRKMWSTAYIRGFFFAGLRTTSRCEALHSHLRQFVHSRINLLNFVQQFQRCLTYFRFREIEADFRSNYGQPVMQSSLHSIERSAASQYTKEIFNMFKVVLSKCMLLKVLEVQQMSSCCIYKVAKYCGNGDAWYVTHSAYAEEKFNCSCFRMESIGLPCDHIVCVLVYLDIDELPKCLVFPRWTKIAKDSIIGSYPGGSFYWDSQVAARYSSLVKMSKDVAELVYDDLDDYNRVVDVLHTELKRLKAKHHGKGRKTNVRSGTIDVDVLDPPQVRTKGCGSNPTPTPSNRRRGPTCGGCGIIGHNRRFCRNASIVHPAITPPPQL 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03364 827 Pfam MULE transposase domain 359 453 IPR018289 -
Tsu04g03364 827 Pfam FAR1 DNA-binding domain 149 239 IPR004330 -
Tsu04g03364 827 MobiDBLite consensus disorder prediction 774 796 - -
Tsu04g03364 827 Coils Coil 731 751 - -
Tsu04g03364 827 MobiDBLite consensus disorder prediction 779 793 - -
Tsu04g03364 827 CDD RNase_HI_RT_Ty1 2 71 - -
Tsu04g03364 827 PANTHER OS02G0262500 PROTEIN 147 777 - -
Tsu04g03364 827 ProSiteProfiles Zinc finger SWIM-type profile. 637 673 IPR007527 GO:0008270
Tsu04g03364 827 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 147 777 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03364 Tsu-Chr4 42856030 42859116 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu04g03364 MULE 1.4e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03364 - - ccaj:109791994 670.233