Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g03353 ATGACTTCTAATAAAttaatcaactccattttttggTGCTTTATTTTACTTGTTGTTATGATCACATTTTTCACTACAAATGTTAGTTCTACCAAGCAATCTAAGATAGAAGGCATGCAAATGAATGTGATTGATAAATGTTGGAGACTCAATCCTGAATGGAGGAAACATCGACAACAACTTGCCGTTTGCTCGGTAGGCTTTACAGGGAAAATGACAAACAACATAGGTAATGACCTAATCCATTATAAAGTTACTGATCCTAGTGACGACCCTTTAAACCCAACACCTGGAACTTTGAGATATGGAGCTTCTAAAATTCAAGGTAAAATTTGGATCACATTTCAAAAGGATATGAACATTAAGCTTGTGAAACCCCTTCTCATCAGTAGTTTCACCACCATTGACGGTCGGGGTGTCAATGTCCACATTGCTGATAATGCGTGCTTGATGATATATAAggCAACAAACATAATCATCCATGGGATTAGGGTTCATCATTGTCGACCTCAAGCTCCTGGAATGGTGATGGGTCCCAATGGAAATATAATGCCATTGGGTCAAGTGGATGGAGATGCAATTAGATTGGTTTCAGCTTCAAAGATTTGGATTGATCATAACACACTTTATGATTGCCCAGATGGTCTTCTAGATGTTACACGAGGTTCCACTGATATTACAATCTCCAACAATTGGTTTAGAGAGCAAGATAAGGTTATGCTTCTTGGACACGATGATGGATTTGTGAGAGATAAAAACATGAAAGTCACTGTTATATACAATCATTTTGGACCTAATTGCCGCCAACGCATGCCTAGAATTCGTCATGGATATGCACATGTTGCGAATAATTTGTACATGGGATGGATGCAATATGCAATAGGTGGAAGTATGGAACCAAGCCTTAAAAGCCAATCAAACCTCTTTATAGCACCAACCACGGGGAATAAGGAGGTGACATGGAGAAAAAGTAATAACGGAAATGGTGACATGTGGAACTTTTATTCAGTTGGGGATGCTTTTGAAAATGGAGCATCCTTCATGGAAACAAAAGGTGGACAAGCGAAAAAACCGAATTATAGCCCAGAACAAAAGTTTAAAGTGGCTGATGCCAAATCTGTGAGATTATTAACAAGATCATCTGGCGTGTTACGATGCAGTAAAACCTCAATATGTTGA 1179 0.3783 MTSNKLINSIFWCFILLVVMITFFTTNVSSTKQSKIEGMQMNVIDKCWRLNPEWRKHRQQLAVCSVGFTGKMTNNIGNDLIHYKVTDPSDDPLNPTPGTLRYGASKIQGKIWITFQKDMNIKLVKPLLISSFTTIDGRGVNVHIADNACLMIYKATNIIIHGIRVHHCRPQAPGMVMGPNGNIMPLGQVDGDAIRLVSASKIWIDHNTLYDCPDGLLDVTRGSTDITISNNWFREQDKVMLLGHDDGFVRDKNMKVTVIYNHFGPNCRQRMPRIRHGYAHVANNLYMGWMQYAIGGSMEPSLKSQSNLFIAPTTGNKEVTWRKSNNGNGDMWNFYSVGDAFENGASFMETKGGQAKKPNYSPEQKFKVADAKSVRLLTRSSGVLRCSKTSIC 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g03353 392 PANTHER PECTATE LYASE 5 389 - -
Tsu04g03353 392 PANTHER PECTATE LYASE 18-RELATED 5 389 IPR045032 GO:0030570
Tsu04g03353 392 SMART amb_all 118 315 IPR002022 -
Tsu04g03353 392 SUPERFAMILY Pectin lyase-like 36 386 IPR011050 -
Tsu04g03353 392 Gene3D - 41 385 IPR012334 -
Tsu04g03353 392 Pfam Pectate lyase 129 309 IPR002022 -
Tsu04g03353 392 PRINTS Pollen allergen Amb family signature 126 142 IPR018082 -
Tsu04g03353 392 PRINTS Pollen allergen Amb family signature 64 81 IPR018082 -
Tsu04g03353 392 PRINTS Pollen allergen Amb family signature 363 386 IPR018082 -
Tsu04g03353 392 PRINTS Pollen allergen Amb family signature 270 289 IPR018082 -
Tsu04g03353 392 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Tsu04g03353 392 PRINTS Pollen allergen Amb family signature 190 211 IPR018082 -
Tsu04g03353 392 PRINTS Pollen allergen Amb family signature 332 356 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g03353 Tsu-Chr4 42709528 42711316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g03353 72 319 Polysaccharide Lyase AT5G09280 70.161 4.64e-139 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g03353 K01728 - gmx:100811216 681.404